{"entity": "researcher", "timestamp": "2026-10-10T10:52:05.575Z", "family": "Buck", "given": "Moritz", "initials": "M", "orcid": "0000-0001-6632-5324", "affiliations": ["Department of Aquatic Sciences and Assessment, Swedish University of Agricultural Sciences, Uppsala, Sweden."], "links": {"self": {"href": "https://publications-affiliated.scilifelab.se/researcher/b846529baa3344b6a2c1ebe7ac46f682.json"}, "display": {"href": "https://publications-affiliated.scilifelab.se/researcher/b846529baa3344b6a2c1ebe7ac46f682"}}, "publications": [{"entity": "publication", "iuid": "ee52153874f44fe194efb3e2d539edd9", "links": {"self": {"href": "https://publications-affiliated.scilifelab.se/publication/ee52153874f44fe194efb3e2d539edd9.json"}, "display": {"href": "https://publications-affiliated.scilifelab.se/publication/ee52153874f44fe194efb3e2d539edd9"}}, "title": "A global deep terrestrial biosphere core microbiome.", "authors": [{"family": "Gonz\u00e1lez-Rosales", "given": "Carolina", "initials": "C", "orcid": "0000-0003-3566-4758", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/5970a774911a44409d7a5d64a8f39273.json"}}, {"family": "Rezaei Somee", "given": "Maryam", "initials": "M"}, {"family": "Buck", "given": "Moritz", "initials": "M", "orcid": "0000-0001-6632-5324", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/b846529baa3344b6a2c1ebe7ac46f682.json"}}, {"family": "Bertilsson", "given": "Stefan", "initials": "S", "orcid": "0000-0002-4265-1835", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/4fd9423637a54230892379a5b50cf47f.json"}}, {"family": "Mehrshad", "given": "Maliheh", "initials": "M", "orcid": "0000-0002-1108-6888", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/5bb2ebf2d5d94ac4bfdeb275983034ea.json"}}, {"family": "Dopson", "given": "Mark", "initials": "M", "orcid": "0000-0002-9622-3318", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/a72a10e2053e458482a99bcc8ac1d405.json"}}], "type": "journal article", "published": "2025-01-00", "journal": {"title": "ISME Commun", "issn": "2730-6151", "volume": "5", "issue": "1", "pages": "ycaf176", "issn-l": null}, "abstract": "The deep biosphere encompasses life beneath the Earth's surface and constitutes a substantial portion of the planet's microbial biomass. This study analyzed nucleic acid datasets from low-carbon and low-energy deep terrestrial subsurface groundwaters across four continents and revealed four core global populations. These populations exhibited metabolic strategies and adaptations reflecting depth and environmental constraints. Erythrobacter featured heterotrophic metabolism; Thiobacillus demonstrated sulfur oxidation coupled to denitrification along with carbon and nitrogen fixation; Methanobacteriaceae were methanogenic autotrophs using the Wood-Ljungdahl pathway (WL); and Candidatus Desulforudis audaxviator functioned as a sulfate-reducer also encoding the WL pathway. Depth-related adaptations suggested heterotrophic dominance at shallower depths with increasing contributions from autotrophy with depth. Finally, comparative genomics revealed minimal evolutionary changes among these populations, suggesting functional conservation since diverging from their ancestral lineages. These findings underscore a global deep biosphere core community.", "doi": "10.1093/ismeco/ycaf176", "pmid": "41216320", "labels": [], "xrefs": [{"db": "pmc", "key": "PMC12596165"}, {"db": "pii", "key": "ycaf176"}, {"db": "figshare", "key": "10.6084/m9.figshare.28190006.v1"}], "notes": [], "created": "2026-10-01T08:26:49.087Z", "modified": "2026-10-01T08:26:49.197Z"}, {"entity": "publication", "iuid": "695cbe6699e54a15b9df69a11fd968c2", "links": {"self": {"href": "https://publications-affiliated.scilifelab.se/publication/695cbe6699e54a15b9df69a11fd968c2.json"}, "display": {"href": "https://publications-affiliated.scilifelab.se/publication/695cbe6699e54a15b9df69a11fd968c2"}}, "title": "Geographic population structure and distinct population dynamics of globally abundant freshwater bacteria", "authors": [{"family": "Hoetzinger", "given": "M", "initials": "M", "orcid": "0000-0002-1932-6479", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/b9b6559071ec4344a56c7b7fe3245c8e.json"}}, {"family": "Hahn", "given": "M W", "initials": "MW", "orcid": "0000-0003-0501-2556", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/6cfff2b8740a4405a99bc693d8f06f13.json"}}, {"family": "Andersson", "given": "L Y", "initials": "LY"}, {"family": "Buckley", "given": "N", "initials": "N"}, {"family": "Ramsin", "given": "C", "initials": "C"}, {"family": "Buck", "given": "M", "initials": "M", "orcid": "0000-0001-6632-5324", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/b846529baa3344b6a2c1ebe7ac46f682.json"}}, {"family": "Nuy", "given": "J K", "initials": "JK", "orcid": "0000-0003-0270-0070", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/97b276848fb74df19614617e2208351e.json"}}, {"family": "Garcia", "given": "S L", "initials": "SL", "orcid": "0000-0002-8622-0308", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/df5f980a4dfb4b669961af28a1242f12.json"}}, {"family": "Puente-S\u00e1nchez", "given": "F", "initials": "F", "orcid": "0000-0002-6341-3692", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/d1be6831eb554eb4be928a3f44249c60.json"}}, {"family": "Bertilsson", "given": "S", "initials": "S", "orcid": "0000-0002-4265-1835", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/4fd9423637a54230892379a5b50cf47f.json"}}], "type": "posted-content", "published": "2023-07-14", "journal": {"issn-l": null}, "abstract": null, "doi": "10.1101/2023.07.13.548520", "pmid": null, "labels": {"SciLifeLab Fellow": "", "Sarahi Garcia": ""}, "xrefs": [], "notes": [], "created": "2026-08-20T10:47:06.637Z", "modified": "2026-09-23T15:28:10.441Z"}, {"entity": "publication", "iuid": "b05c6b3b3f7d4d4b94b6a3003f49200b", "links": {"self": {"href": "https://publications-affiliated.scilifelab.se/publication/b05c6b3b3f7d4d4b94b6a3003f49200b.json"}, "display": {"href": "https://publications-affiliated.scilifelab.se/publication/b05c6b3b3f7d4d4b94b6a3003f49200b"}}, "title": "Linking prokaryotic genome size variation to metabolic potential and environment.", "authors": [{"family": "Rodr\u00edguez-Gij\u00f3n", "given": "Alejandro", "initials": "A", "orcid": "0000-0002-1649-6894", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/7e5f654c25644bb5b306ead087dc55ae.json"}}, {"family": "Buck", "given": "Moritz", "initials": "M", "orcid": "0000-0001-6632-5324", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/b846529baa3344b6a2c1ebe7ac46f682.json"}}, {"family": "Andersson", "given": "Anders F", "initials": "AF", "orcid": "0000-0002-3627-6899", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/cc9be99ec6ca47ed8a805ebb4db7c168.json"}}, {"family": "Izabel-Shen", "given": "Dandan", "initials": "D", "orcid": "0000-0002-3280-1166", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/1c6b3701312e44a398d6d4a4f609f3bb.json"}}, {"family": "Nascimento", "given": "Francisco J A", "initials": "FJA", "orcid": "0000-0003-3722-1360", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/ef372b87ee4b4ff1ba1a36ca8e197eaf.json"}}, {"family": "Garcia", "given": "Sarahi L", "initials": "SL", "orcid": "0000-0002-8622-0308", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/df5f980a4dfb4b669961af28a1242f12.json"}}], "type": "journal article", "published": "2023-03-27", "journal": {"title": "ISME Commun", "issn": "2730-6151", "volume": "3", "issue": "1", "pages": "25", "issn-l": null}, "abstract": "While theories and models have appeared to explain genome size as a result of evolutionary processes, little work has shown that genome sizes carry ecological signatures. Our work delves into the ecological implications of microbial genome size variation in benthic and pelagic habitats across environmental gradients of the brackish Baltic Sea. While depth is significantly associated with genome size in benthic and pelagic brackish metagenomes, salinity is only correlated to genome size in benthic metagenomes. Overall, we confirm that prokaryotic genome sizes in Baltic sediments (3.47 Mbp) are significantly bigger than in the water column (2.96 Mbp). While benthic genomes have a higher number of functions than pelagic genomes, the smallest genomes coded for a higher number of module steps per Mbp for most of the functions irrespective of their environment. Some examples of this functions are amino acid metabolism and central carbohydrate metabolism. However, we observed that nitrogen metabolism was almost absent in pelagic genomes and was mostly present in benthic genomes. Finally, we also show that Bacteria inhabiting Baltic sediments and water column not only differ in taxonomy, but also in their metabolic potential, such as the Wood-Ljungdahl pathway or the presence of different hydrogenases. Our work shows how microbial genome size is linked to abiotic factors in the environment, metabolic potential and taxonomic identity of Bacteria and Archaea within aquatic ecosystems.", "doi": "10.1038/s43705-023-00231-x", "pmid": "36973336", "labels": {"SciLifeLab Fellow": "", "Sarahi Garcia": ""}, "xrefs": [{"db": "pmc", "key": "PMC10042847"}, {"db": "pii", "key": "10.1038/s43705-023-00231-x"}], "notes": [], "created": "2023-05-15T12:35:52.016Z", "modified": "2026-09-23T08:55:05.930Z"}, {"entity": "publication", "iuid": "dd62f3d23127419c9fdbf688861ee8a5", "links": {"self": {"href": "https://publications-affiliated.scilifelab.se/publication/dd62f3d23127419c9fdbf688861ee8a5.json"}, "display": {"href": "https://publications-affiliated.scilifelab.se/publication/dd62f3d23127419c9fdbf688861ee8a5"}}, "title": "Linking prokaryotic genome size variation to metabolic potential and environment", "authors": [{"family": "Rodr\u00edguez-Gij\u00f3n", "given": "Alejandro", "initials": "A", "orcid": "0000-0002-1649-6894", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/7e5f654c25644bb5b306ead087dc55ae.json"}}, {"family": "Buck", "given": "Moritz", "initials": "M", "orcid": "0000-0001-6632-5324", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/b846529baa3344b6a2c1ebe7ac46f682.json"}}, {"family": "Andersson", "given": "Anders F", "initials": "AF", "orcid": "0000-0002-3627-6899", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/cc9be99ec6ca47ed8a805ebb4db7c168.json"}}, {"family": "Izabel-Shen", "given": "Dandan", "initials": "D", "orcid": "0000-0002-3280-1166", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/1c6b3701312e44a398d6d4a4f609f3bb.json"}}, {"family": "Nascimento", "given": "Francisco J A", "initials": "FJA", "orcid": "0000-0003-3722-1360", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/ef372b87ee4b4ff1ba1a36ca8e197eaf.json"}}, {"family": "Garcia", "given": "Sarahi L", "initials": "SL", "orcid": "0000-0002-8622-0308", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/df5f980a4dfb4b669961af28a1242f12.json"}}], "type": "posted-content", "published": "2022-10-21", "journal": {"issn-l": null}, "abstract": null, "doi": "10.1101/2022.10.20.512849", "pmid": null, "labels": {"SciLifeLab Fellow": "", "Sarahi Garcia": ""}, "xrefs": [], "notes": [], "created": "2026-08-20T10:41:44.160Z", "modified": "2026-09-23T14:34:26.261Z"}, {"entity": "publication", "iuid": "707d626f25e5449d87c70493f93cb775", "links": {"self": {"href": "https://publications-affiliated.scilifelab.se/publication/707d626f25e5449d87c70493f93cb775.json"}, "display": {"href": "https://publications-affiliated.scilifelab.se/publication/707d626f25e5449d87c70493f93cb775"}}, "title": "Taxonomic and functional diversity of aquatic heterotrophs is sustained by dissolved organic matter chemodiversity", "authors": [{"family": "Garcia", "given": "Sarahi L", "initials": "SL", "orcid": "0000-0002-8622-0308", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/df5f980a4dfb4b669961af28a1242f12.json"}}, {"family": "Nuy", "given": "Julia K", "initials": "JK", "orcid": "0000-0003-0270-0070", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/97b276848fb74df19614617e2208351e.json"}}, {"family": "Mehrshad", "given": "Maliheh", "initials": "M", "orcid": "0000-0002-1108-6888", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/5bb2ebf2d5d94ac4bfdeb275983034ea.json"}}, {"family": "Hampel", "given": "Justyna J", "initials": "JJ", "orcid": "0000-0002-2869-5807", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/66b73628c10f4a7db515193f76023a27.json"}}, {"family": "Sedano-Nu\u00f1ez", "given": "Vicente T", "initials": "VT", "orcid": "0000-0002-2942-5390", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/ab196dd74352441ead33964c702d1145.json"}}, {"family": "Buck", "given": "Moritz", "initials": "M", "orcid": "0000-0001-6632-5324", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/b846529baa3344b6a2c1ebe7ac46f682.json"}}, {"family": "Divne", "given": "Anna Maria", "initials": "AM"}, {"family": "Lindstr\u00f6m", "given": "Eva S", "initials": "ES", "orcid": "0000-0001-8920-3071", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/c3afeabbf8464b2480b4daee3774a0b7.json"}}, {"family": "Petras", "given": "Daniel", "initials": "D", "orcid": "0000-0002-6561-3022", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/2f150f02896549d4a761b566a35ad324.json"}}, {"family": "Hawkes", "given": "Jeffrey", "initials": "J"}, {"family": "Bertilsson", "given": "Stefan", "initials": "S", "orcid": "0000-0002-4265-1835", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/4fd9423637a54230892379a5b50cf47f.json"}}], "type": "posted-content", "published": "2022-03-22", "journal": {"issn-l": null}, "abstract": null, "doi": "10.1101/2022.03.21.485019", "pmid": null, "labels": {"SciLifeLab Fellow": "", "Sarahi Garcia": ""}, "xrefs": [], "notes": [], "created": "2026-09-23T14:16:45.969Z", "modified": "2026-09-23T14:16:46.073Z"}, {"entity": "publication", "iuid": "06d790bb58174251ab560d1f04f059a2", "links": {"self": {"href": "https://publications-affiliated.scilifelab.se/publication/06d790bb58174251ab560d1f04f059a2.json"}, "display": {"href": "https://publications-affiliated.scilifelab.se/publication/06d790bb58174251ab560d1f04f059a2"}}, "title": "16S rRNA gene sequences of Candidatus Methylumidiphilus ( Methylococcales ), a putative methanotrophic genus in lakes and ponds", "authors": [{"family": "Rissanen", "given": "Antti J", "initials": "AJ", "orcid": "0000-0002-5678-3361", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/002c990c3f5c41c98f27c84bf4a82c97.json"}}, {"family": "Buck", "given": "Moritz", "initials": "M", "orcid": "0000-0001-6632-5324", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/b846529baa3344b6a2c1ebe7ac46f682.json"}}, {"family": "Peura", "given": "Sari", "initials": "S", "orcid": "0000-0003-3892-8157", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/be9a0edb050549978d1f489fb98017b3.json"}}], "type": "posted-content", "published": "2021-09-30", "journal": {"issn-l": null}, "abstract": null, "doi": "10.1101/2021.09.28.462094", "pmid": null, "labels": {"SciLifeLab Fellow": "", "Sari Peura": ""}, "xrefs": [], "notes": [], "created": "2026-09-23T15:09:09.418Z", "modified": "2026-09-23T15:09:09.466Z"}, {"entity": "publication", "iuid": "cc625c3138914f4cb4e279fae2cc8154", "links": {"self": {"href": "https://publications-affiliated.scilifelab.se/publication/cc625c3138914f4cb4e279fae2cc8154.json"}, "display": {"href": "https://publications-affiliated.scilifelab.se/publication/cc625c3138914f4cb4e279fae2cc8154"}}, "title": "A genomic perspective across Earth\u2019s microbiomes reveals that genome size in Archaea and Bacteria is linked to ecosystem type and trophic strategy", "authors": [{"family": "Rodr\u00edguez-Gij\u00f3n", "given": "Alejandro", "initials": "A", "orcid": "0000-0002-1649-6894", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/7e5f654c25644bb5b306ead087dc55ae.json"}}, {"family": "Nuy", "given": "Julia K", "initials": "JK", "orcid": "0000-0003-0270-0070", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/97b276848fb74df19614617e2208351e.json"}}, {"family": "Mehrshad", "given": "Maliheh", "initials": "M", "orcid": "0000-0002-1108-6888", "researcher": {"href": 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"2021-01-18", "journal": {"title": "bioRxiv", "issn": null, "issn-l": null, "volume": null, "issue": null, "pages": null}, "abstract": null, "doi": "10.1101/2021.01.18.427069", "pmid": null, "labels": {"SciLifeLab Fellow": null, "Sarahi Garcia": null}, "xrefs": [], "notes": [], "created": "2026-08-20T10:01:11.948Z", "modified": "2026-10-05T08:22:20.687Z"}, {"entity": "publication", "iuid": "076dddf5907a4928a7f6a6feb25b1af1", "links": {"self": {"href": "https://publications-affiliated.scilifelab.se/publication/076dddf5907a4928a7f6a6feb25b1af1.json"}, "display": {"href": "https://publications-affiliated.scilifelab.se/publication/076dddf5907a4928a7f6a6feb25b1af1"}}, "title": "Comprehensive dataset of shotgun metagenomes from stratified freshwater lakes and ponds", "authors": [{"family": "Buck", "given": "Moritz", "initials": "M", "orcid": "0000-0001-6632-5324", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/b846529baa3344b6a2c1ebe7ac46f682.json"}}, 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