{"entity": "researcher", "timestamp": "2026-08-20T20:50:06.825Z", "family": "Imam", "given": "Farhad", "initials": "F", "orcid": "0000-0003-2854-2568", "affiliations": ["Gates Ventures, Seattle, WA, USA."], "links": {"self": {"href": "https://publications-affiliated.scilifelab.se/researcher/a4b307d7379c43498446d995e26ef596.json"}, "display": {"href": "https://publications-affiliated.scilifelab.se/researcher/a4b307d7379c43498446d995e26ef596"}}, "publications": [{"entity": "publication", "iuid": "49405339e3de4bb982d056a1b337fcf4", "links": {"self": {"href": "https://publications-affiliated.scilifelab.se/publication/49405339e3de4bb982d056a1b337fcf4.json"}, "display": {"href": "https://publications-affiliated.scilifelab.se/publication/49405339e3de4bb982d056a1b337fcf4"}}, "title": "Author Correction: Shared and disease-specific pathways in frontotemporal dementia and Alzheimer's and Parkinson's diseases.", "authors": [{"family": "Ali", "given": "Muhammad", "initials": "M", "orcid": "0000-0002-1399-6631", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/21caa67549d64397bee640897fb7b8b3.json"}}, {"family": "Erabadda", "given": "Buddhiprabha", "initials": "B", "orcid": "0000-0003-4401-7149", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/337d619ad323404eb232c956581a3613.json"}}, {"family": "Chen", "given": "Yike", "initials": "Y", "orcid": "0009-0003-9181-8608", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/e8f9e9c443a84eb4a5c4b172e0f6b787.json"}}, {"family": "Xu", "given": "Ying", "initials": "Y", "orcid": "0009-0006-0387-2439", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/0a6611b53f5a449a995232720ed6633b.json"}}, {"family": "Gong", "given": "Katherine", "initials": "K", "orcid": "0009-0008-7614-9545", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/95690c616af1410697e0f4aeedd0f6e1.json"}}, {"family": "Liu", "given": "Menghan", "initials": "M", "orcid": "0009-0008-9902-5983", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/4149c01886b845ff820c0d57dda9a3e2.json"}}, {"family": "Pichet Binette", "given": "Alexa", "initials": "A"}, {"family": "Timsina", "given": "Jigyasha", "initials": "J"}, {"family": "Western", "given": "Daniel", "initials": "D", "orcid": "0000-0003-3725-9553", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/7d7980cddda947c392ece419b3f09b2d.json"}}, {"family": "Yang", "given": "Chengran", "initials": "C", "orcid": "0000-0003-4577-5590", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/f11aa3f425634c9cb9bf2c30752376c5.json"}}, {"family": "Heo", "given": "Gyujin", "initials": "G", "orcid": "0000-0003-3499-2848", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/25b8eb4f781644a4a58f1cfbb6d20bc6.json"}}, {"family": "Vogel", "given": "Jacob W", "initials": "JW", "orcid": "0000-0001-6394-9940", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/d2ad5af780c245da9b59a8c80a0b00ff.json"}}, {"family": "Tijms", "given": "Betty M", "initials": "BM", "orcid": "0000-0002-2612-1797", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/803d2e2311394c50b47c43c5f6a4c425.json"}}, {"family": "Krish", "given": "Varsha", "initials": "V"}, {"family": "Imam", "given": "Farhad", "initials": "F", "orcid": "0000-0003-2854-2568", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/a4b307d7379c43498446d995e26ef596.json"}}, {"family": "Global Neurodegeneration Proteomics Consortium (GNPC)", "given": "", "initials": ""}, {"family": "Hansson", "given": "Oskar", "initials": "O", "orcid": "0000-0001-8467-7286", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/9292115deece4d9fafc8a02d4a430707.json"}}, {"family": "Winchester", "given": "Laura", "initials": "L"}, {"family": "Cruchaga", "given": "Carlos", "initials": "C", "orcid": "0000-0002-0276-2899", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/b9c0207f812f48c1bfd0918169154508.json"}}], "type": "published erratum", "published": "2025-10-00", "journal": {"title": "Nat. Med.", "issn": "1546-170X", "volume": "31", "issue": "10", "pages": "3569", "issn-l": "1078-8956"}, "abstract": null, "doi": "10.1038/s41591-025-03970-7", "pmid": "40897975", "labels": [], "xrefs": [{"db": "pmc", "key": "PMC12532582"}, {"db": "pii", "key": "10.1038/s41591-025-03970-7"}], "notes": [], "created": "2026-08-20T09:02:09.943Z", "modified": "2026-08-20T09:02:10.108Z"}, {"entity": "publication", "iuid": "c889c9fd45524086a24104f2fd3095a2", "links": {"self": {"href": "https://publications-affiliated.scilifelab.se/publication/c889c9fd45524086a24104f2fd3095a2.json"}, "display": {"href": "https://publications-affiliated.scilifelab.se/publication/c889c9fd45524086a24104f2fd3095a2"}}, "title": "The Global Neurodegeneration Proteomics Consortium: biomarker and drug target discovery for common neurodegenerative diseases and aging.", "authors": [{"family": "Imam", "given": "Farhad", "initials": "F", "orcid": "0000-0003-2854-2568", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/a4b307d7379c43498446d995e26ef596.json"}}, {"family": "Saloner", "given": "Rowan", "initials": "R", "orcid": "0000-0002-1351-6183", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/23de862940594622a28cb1e1c78b4447.json"}}, {"family": "Vogel", "given": "Jacob W", "initials": "JW", "orcid": "0000-0001-6394-9940", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/d2ad5af780c245da9b59a8c80a0b00ff.json"}}, {"family": "Krish", "given": "Varsha", "initials": "V"}, {"family": "Abdel-Azim", "given": "Gamal", "initials": "G"}, {"family": "Ali", "given": "Muhammad", "initials": "M", "orcid": "0000-0002-1399-6631", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/21caa67549d64397bee640897fb7b8b3.json"}}, {"family": "An", "given": "Lijun", "initials": "L", "orcid": "0000-0003-1030-4625", "researcher": {"href": 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{"family": "Petersen", "given": "Ronald C", "initials": "RC"}, {"family": "Reiman", "given": "Eric M", "initials": "EM", "orcid": "0000-0002-0705-3696", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/0282bd2bddad4e539605aa663f3ee79d.json"}}, {"family": "Robinson", "given": "Oliver", "initials": "O", "orcid": "0000-0002-4735-0468", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/9532ceaa97eb4526b5b9446ac72747da.json"}}, {"family": "Rothstein", "given": "Jeffrey D", "initials": "JD"}, {"family": "Saykin", "given": "Andrew J", "initials": "AJ", "orcid": "0000-0002-1376-8532", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/a9b775d178844c869a3b9655fa204121.json"}}, {"family": "Shvetcov", "given": "Artur", "initials": "A"}, {"family": "Slawson", "given": "Chad", "initials": "C", "orcid": "0000-0002-6886-4847", "researcher": {"href": 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"https://publications-affiliated.scilifelab.se/researcher/d3c771604ad24c5b98db69b514f30592.json"}}, {"family": "Winchester", "given": "Laura M", "initials": "LM"}, {"family": "Wyss-Coray", "given": "Tony", "initials": "T", "orcid": "0000-0001-5893-0831", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/6ad3115d413a4a46ad05465b15306b21.json"}}, {"family": "Yang", "given": "Chengran", "initials": "C", "orcid": "0000-0003-4577-5590", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/f11aa3f425634c9cb9bf2c30752376c5.json"}}, {"family": "Bose", "given": "Niranjan", "initials": "N", "orcid": "0000-0002-1301-7827", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/03a544bbd61f48efa4ff0fc7d1578d5a.json"}}, {"family": "Lovestone", "given": "Simon", "initials": "S"}, {"family": "Global Neurodegeneration Proteomics Consortium (GNPC)", "given": "", "initials": ""}], "type": "journal article", "published": "2025-08-00", "journal": {"title": "Nat. Med.", "issn": "1546-170X", "volume": "31", "issue": "8", "pages": "2556-2566", "issn-l": "1078-8956"}, "abstract": "More than 57 million people globally suffer from neurodegenerative diseases, a figure expected to double every 20 years. Despite this growing burden, there are currently no cures, and treatment options remain limited due to disease heterogeneity, prolonged preclinical and prodromal phases, poor understanding of disease mechanisms, and diagnostic challenges. Identifying novel biomarkers is crucial for improving early detection, prognosis, staging and subtyping of these conditions. High-dimensional molecular studies in biofluids ('omics') offer promise for scalable biomarker discovery, but challenges in assembling large, diverse datasets hinder progress. To address this, the Global Neurodegeneration Proteomics Consortium (GNPC)-a public-private partnership-established one of the world's largest harmonized proteomic datasets. It includes approximately 250 million unique protein measurements from multiple platforms from more than 35,000 biofluid samples (plasma, serum and cerebrospinal fluid) contributed by 23 partners, alongside associated clinical data spanning Alzheimer's disease (AD), Parkinson's disease (PD), frontotemporal dementia (FTD) and amyotrophic lateral sclerosis (ALS). This dataset is accessible to GNPC members via the Alzheimer's Disease Data Initiative's AD Workbench, a secure cloud-based environment, and will be available to the wider research community on 15 July 2025. Here we present summary analyses of the plasma proteome revealing disease-specific differential protein abundance and transdiagnostic proteomic signatures of clinical severity. Furthermore, we describe a robust plasma proteomic signature of APOE \u03b54 carriership, reproducible across AD, PD, FTD and ALS, as well as distinct patterns of organ aging across these conditions. This work demonstrates the power of international collaboration, data sharing and open science to accelerate discovery in neurodegeneration research.", "doi": "10.1038/s41591-025-03834-0", "pmid": "40665048", "labels": [], "xrefs": [{"db": "pmc", "key": "PMC12353841"}, {"db": "pii", "key": "10.1038/s41591-025-03834-0"}], "notes": [], "created": "2026-08-20T09:02:07.394Z", "modified": "2026-08-20T09:02:08.330Z"}, {"entity": "publication", "iuid": "e49434088f05405ab636c597135accea", "links": {"self": {"href": "https://publications-affiliated.scilifelab.se/publication/e49434088f05405ab636c597135accea.json"}, "display": {"href": "https://publications-affiliated.scilifelab.se/publication/e49434088f05405ab636c597135accea"}}, "title": "Shared and disease-specific pathways in frontotemporal dementia and Alzheimer's and Parkinson's diseases.", "authors": [{"family": "Ali", "given": "Muhammad", "initials": "M", "orcid": "0000-0002-1399-6631", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/21caa67549d64397bee640897fb7b8b3.json"}}, {"family": "Erabadda", "given": "Buddhiprabha", "initials": "B", "orcid": "0000-0003-4401-7149", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/337d619ad323404eb232c956581a3613.json"}}, {"family": "Chen", "given": "Yike", "initials": "Y", "orcid": "0009-0003-9181-8608", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/e8f9e9c443a84eb4a5c4b172e0f6b787.json"}}, {"family": "Xu", "given": "Ying", "initials": "Y", "orcid": "0009-0006-0387-2439", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/0a6611b53f5a449a995232720ed6633b.json"}}, {"family": "Gong", "given": "Katherine", "initials": "K", "orcid": "0009-0008-7614-9545", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/95690c616af1410697e0f4aeedd0f6e1.json"}}, {"family": "Liu", "given": "Menghan", "initials": "M", "orcid": "0009-0008-9902-5983", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/4149c01886b845ff820c0d57dda9a3e2.json"}}, {"family": "Pichet Binette", "given": "Alexa", "initials": "A"}, {"family": "Timsina", "given": "Jigyasha", "initials": "J"}, {"family": "Western", "given": "Daniel", "initials": "D", "orcid": "0000-0003-3725-9553", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/7d7980cddda947c392ece419b3f09b2d.json"}}, {"family": "Yang", "given": "Chengran", "initials": "C", "orcid": "0000-0003-4577-5590", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/f11aa3f425634c9cb9bf2c30752376c5.json"}}, {"family": "Heo", "given": "Gyujin", "initials": "G", "orcid": "0000-0003-3499-2848", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/25b8eb4f781644a4a58f1cfbb6d20bc6.json"}}, {"family": "Vogel", "given": "Jacob W", "initials": "JW", "orcid": "0000-0001-6394-9940", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/d2ad5af780c245da9b59a8c80a0b00ff.json"}}, {"family": "Tijms", "given": "Betty M", "initials": "BM", "orcid": "0000-0002-2612-1797", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/803d2e2311394c50b47c43c5f6a4c425.json"}}, {"family": "Krish", "given": "Varsha", "initials": "V"}, {"family": "Imam", "given": "Farhad", "initials": "F", "orcid": "0000-0003-2854-2568", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/a4b307d7379c43498446d995e26ef596.json"}}, {"family": "Global Neurodegeneration Proteomics Consortium (GNPC)", "given": "", "initials": ""}, {"family": "Hansson", "given": "Oskar", "initials": "O", "orcid": "0000-0001-8467-7286", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/9292115deece4d9fafc8a02d4a430707.json"}}, {"family": "Winchester", "given": "Laura", "initials": "L"}, {"family": "Cruchaga", "given": "Carlos", "initials": "C", "orcid": "0000-0002-0276-2899", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/b9c0207f812f48c1bfd0918169154508.json"}}], "type": "journal article", "published": "2025-08-00", "journal": {"title": "Nat. Med.", "issn": "1546-170X", "volume": "31", "issue": "8", "pages": "2567-2577", "issn-l": "1078-8956"}, "abstract": "Neurodegenerative diseases (NDs), such as Alzheimer's disease (AD), Parkinson's disease (PD) and frontotemporal dementia (FTD), exhibit distinct yet overlapping pathological mechanisms. Leveraging large-scale plasma proteomics data from the Global Neurodegeneration Proteomics Consortium, we analyzed 10,527 plasma samples (1,936 AD, 525 PD, 163 FTD, 1,638 dementia and 6,265 controls) to identify disease-specific and shared proteins across NDs. We identified 5,187 proteins significantly associated with AD, 3,748 with PD and 2,380 with FTD that revealed both common and divergent proteomic signatures, which were confirmed by multiple analytical approaches and orthogonal validation. PD and FTD showed the highest overlap (r2 = 0.44) and AD and PD the least (r2 = 0.04). Immune system, glycolysis, and matrisome-related pathways were enriched across all NDs, while disease-specific pathways included apoptotic processes in AD, endoplasmic reticulum-phagosome impairment in PD and platelet dysregulation in FTD. Network analysis identified key upstream regulators (RPS27A in AD, IRAK4 in PD and MAPK1 in FTD) potentially driving these proteomic changes. These findings reveal distinct and shared mechanisms across NDs, highlighting potential regulatory proteins and pathways for diagnostic and therapeutic strategies in neurodegeneration.", "doi": "10.1038/s41591-025-03833-1", "pmid": "40665052", "labels": [], "xrefs": [{"db": "pmc", "key": "PMC12404994"}, {"db": "pii", "key": "10.1038/s41591-025-03833-1"}], "notes": [], "created": "2026-08-20T09:02:05.155Z", "modified": "2026-08-20T09:02:05.674Z"}, {"entity": "publication", "iuid": "5f981cbb10d5403baea20853de7d39ad", "links": {"self": {"href": "https://publications-affiliated.scilifelab.se/publication/5f981cbb10d5403baea20853de7d39ad.json"}, "display": {"href": "https://publications-affiliated.scilifelab.se/publication/5f981cbb10d5403baea20853de7d39ad"}}, "title": "Benchmarking the AI-based diagnostic potential of plasma proteomics for neurodegenerative disease in 17,170 people.", "authors": [{"family": "An", "given": "Lijun", "initials": "L", "orcid": "0000-0003-1030-4625", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/06744ec5a4ad4223b88038071e7b1dbf.json"}}, {"family": "Pichet-Binette", "given": "Alexa", "initials": "A", "orcid": "0000-0001-5218-3337", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/e8f0967b7b694bcf96e30a051a5bbe9a.json"}}, {"family": "Hristovska", "given": "Ines", "initials": "I"}, {"family": "Vilkaite", "given": "Gabriele", "initials": "G", "orcid": "0009-0009-6985-4307", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/fc705f5708ae447ea1ebd6a3a0bd73cf.json"}}, {"family": "Yu", "given": "Xiao", "initials": "X", "orcid": "0009-0006-6760-4134", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/49c14c0be1f2486bb835dd3090785268.json"}}, {"family": "Smets", "given": "Bart", "initials": "B"}, {"family": "Saloner", "given": "Rowan", "initials": "R", "orcid": "0000-0002-1351-6183", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/23de862940594622a28cb1e1c78b4447.json"}}, {"family": "Tasaki", "given": "Shinya", "initials": "S", "orcid": "0000-0003-3656-7394", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/741c7fb0f6044af6a9cae7b128972b10.json"}}, {"family": "Xu", "given": "Ying", "initials": "Y"}, {"family": "Krish", "given": "Varsha", "initials": "V"}, {"family": "Imam", "given": "Farhad", "initials": "F", "orcid": "0000-0003-2854-2568", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/a4b307d7379c43498446d995e26ef596.json"}}, {"family": "Janelidze", "given": "Shorena", "initials": "S", "orcid": "0000-0003-2869-8378", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/a3e2ab428bdc42838f5af521a4d8b862.json"}}, {"family": "van Westen", "given": "Danielle", "initials": "D", "orcid": "0000-0001-8649-9874", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/38afd81dca574f4a9884a1ce97b78e50.json"}}, {"family": "Global Neurodegeneration Proteomics Consortium (GNPC)", "given": "", "initials": ""}, {"family": "Stomrud", "given": "Erik", "initials": "E", "orcid": "0000-0002-0841-5580", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/ac36a615800c40b98d64369cb029497c.json"}}, {"family": "Whelan", "given": "Christopher D", "initials": "CD", "orcid": "0000-0003-0308-5583", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/172a710cb4974f168783a34e02eca6ee.json"}}, {"family": "Palmqvist", "given": "Sebastian", "initials": "S", "orcid": "0000-0002-9267-1930", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/6fbd05e87cfb4057a1a7e41d9fb94aef.json"}}, {"family": "Ossenkoppele", "given": "Rik", "initials": "R", "orcid": "0000-0003-1584-7477", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/9486d27ddd1b4b6485fa3ca10e0f3d82.json"}}, {"family": "Mattsson-Carlgren", "given": "Niklas", "initials": "N", "orcid": "0000-0002-8885-7724", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/bb26ae59b2a04f369c5ebc2f2375195a.json"}}, {"family": "Hansson", "given": "Oskar", "initials": "O", "orcid": "0000-0001-8467-7286", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/9292115deece4d9fafc8a02d4a430707.json"}}, {"family": "Vogel", "given": "Jacob W", "initials": "JW", "orcid": "0000-0001-6394-9940", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/d2ad5af780c245da9b59a8c80a0b00ff.json"}}], "type": "journal article", "published": "2025-07-01", "journal": {"title": "medRxiv", "issn-l": null}, "abstract": "Co-pathology is a common feature of neurodegenerative diseases that complicates diagnosis, treatment and clinical management. However, sensitive, specific and scalable biomarkers for in vivo pathological diagnosis are not available for most neurodegenerative neuropathologies. Here, we present ProtAIDe-Dx, a deep joint-learning model trained on 17,170 patients and controls that uses plasma proteomics to provide simultaneous probabilistic diagnosis across six conditions associated with dementia in aging. ProtAIDe-Dx achieves cross-validated balanced classification accuracy of 69%-96% and AUCs > 79% across all conditions. The model's diagnostic probabilities highlighted subgroups of patients with co-pathologies, and were associated with pathology-specific biomarkers in an external sample, even among cognitively unimpaired people. Model interpretation revealed a suite of protein networks marking shared and specific biological processes across diseases, and identified novel and previously described proteins discriminating each diagnosis. ProtAIDe-Dx significantly improved biomarker-based differential diagnosis in a memory clinic sample, pinpointing proteins leading to diagnostic decisions at an individual level. Together, this work highlights the promise of plasma proteomics to improve patient-level diagnostic work-up with a single blood draw.", "doi": "10.1101/2025.06.27.25330344", "pmid": "40630573", "labels": [], "xrefs": [{"db": "pmc", "key": "PMC12236936"}, {"db": "pii", "key": "2025.06.27.25330344"}], "notes": [], "created": "2026-08-20T11:06:20.965Z", "modified": "2026-08-20T11:06:21.225Z"}]}