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Immunol.", "issn": "1529-2916", "volume": "24", "issue": "9", "pages": "1540-1551", "issn-l": "1529-2908"}, "abstract": "Circulating proteins have important functions in inflammation and a broad range of diseases. To identify genetic influences on inflammation-related proteins, we conducted a genome-wide protein quantitative trait locus (pQTL) study of 91 plasma proteins measured using the Olink Target platform in 14,824 participants. We identified 180 pQTLs (59 cis, 121 trans). Integration of pQTL data with eQTL and disease genome-wide association studies provided insight into pathogenesis, implicating lymphotoxin-\u03b1 in multiple sclerosis. Using Mendelian randomization (MR) to assess causality in disease etiology, we identified both shared and distinct effects of specific proteins across immune-mediated diseases, including directionally discordant effects of CD40 on risk of rheumatoid arthritis versus multiple sclerosis and inflammatory bowel disease. MR implicated CXCL5 in the etiology of ulcerative colitis (UC) and we show elevated gut CXCL5 transcript expression in patients with UC. These results identify targets of existing drugs and provide a powerful resource to facilitate future drug target prioritization.", "doi": "10.1038/s41590-023-01588-w", "pmid": "37563310", "labels": [], "xrefs": [{"db": "pmc", "key": "PMC10457199"}, {"db": "pii", "key": "10.1038/s41590-023-01588-w"}], "notes": [], "created": "2026-08-20T09:01:37.758Z", "modified": "2026-08-20T09:01:38.213Z"}, {"entity": "publication", "iuid": "9b584b66544649dfae4781915c418be4", "links": {"self": {"href": "https://publications-affiliated.scilifelab.se/publication/9b584b66544649dfae4781915c418be4.json"}, "display": {"href": "https://publications-affiliated.scilifelab.se/publication/9b584b66544649dfae4781915c418be4"}}, "title": "An atlas of genetic scores to predict multi-omic traits.", "authors": [{"family": "Xu", "given": "Yu", "initials": "Y", "orcid": "0000-0002-7304-5045", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/3ac4920de9564d809602c26f92e4aeca.json"}}, {"family": "Ritchie", "given": "Scott C", "initials": "SC", "orcid": "0000-0002-8454-9548", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/36a4d823852c4bae97ddc68a05030b72.json"}}, {"family": "Liang", "given": "Yujian", "initials": "Y"}, {"family": "Timmers", "given": "Paul R H J", "initials": "PRHJ", "orcid": "0000-0002-5197-1267", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/c1a7fb58cb2f4bd1b48f23be33de0c6e.json"}}, {"family": "Pietzner", "given": "Maik", "initials": "M", "orcid": "0000-0003-3437-9963", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/3304844cece945168cbec0b5e3d9a9cf.json"}}, {"family": "Lannelongue", "given": "Lo\u00efc", "initials": "L", "orcid": "0000-0002-9135-1345", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/8d2fdb81bd8c4b93af2d061f6421540f.json"}}, {"family": "Lambert", "given": "Samuel A", "initials": "SA", "orcid": "0000-0001-8222-008X", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/23811479ba0a41a99a94f9c0d3f06bd4.json"}}, {"family": "Tahir", "given": "Usman A", "initials": "UA"}, {"family": "May-Wilson", "given": "Sebastian", "initials": "S", "orcid": "0000-0003-2668-5717", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/3d39731ddad649e88c6958a9fc03008b.json"}}, {"family": "Foguet", "given": "Carles", "initials": "C", "orcid": "0000-0001-8494-9595", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/c41865149ac74c4695959ced5ce4ec9f.json"}}, {"family": "Johansson", "given": "\u00c5sa", "initials": "\u00c5", "orcid": "0000-0002-2915-4498", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/a0bac3e1e64949fcbac4b4d839e1144d.json"}}, {"family": "Surendran", "given": "Praveen", "initials": "P"}, {"family": "Nath", "given": "Artika P", "initials": "AP"}, {"family": "Persyn", "given": "Elodie", "initials": "E", "orcid": "0000-0001-9104-1972", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/6d882b5f4416425ab28deb0a35d905ef.json"}}, {"family": "Peters", "given": "James E", "initials": "JE", "orcid": "0000-0002-9415-3440", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/1cdf78018d1448498239609190aade2d.json"}}, {"family": "Oliver-Williams", "given": "Clare", "initials": "C"}, {"family": "Deng", "given": "Shuliang", "initials": "S"}, {"family": "Prins", "given": "Bram", "initials": "B", "orcid": "0000-0001-5774-034X", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/2677fba12f9549b193a0498b539cd793.json"}}, {"family": "Luan", "given": "Jian'an", "initials": "J", "orcid": "0000-0003-3137-6337", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/f2180f4f03be411ba2c80c18a78e6645.json"}}, {"family": "Bomba", "given": "Lorenzo", "initials": "L"}, {"family": "Soranzo", "given": "Nicole", "initials": "N", "orcid": "0000-0003-1095-3852", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/751b4656807c42f9a668ebb98e8da987.json"}}, {"family": "Di Angelantonio", "given": "Emanuele", "initials": "E"}, {"family": "Pirastu", "given": "Nicola", "initials": "N"}, {"family": "Tai", "given": "E Shyong", "initials": "ES", "orcid": "0000-0003-2929-8966", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/d116286b0f524b6d835ef78c4f1dfd14.json"}}, {"family": "van Dam", "given": "Rob M", "initials": "RM"}, {"family": "Parkinson", "given": "Helen", "initials": "H"}, {"family": "Davenport", "given": "Emma E", "initials": "EE"}, {"family": "Paul", "given": "Dirk S", "initials": "DS", "orcid": "0000-0002-8230-0116", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/2169975c0a46456c9f29a2b7b3da0b30.json"}}, {"family": "Yau", "given": "Christopher", "initials": "C", "orcid": "0000-0001-7615-8523", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/bbc82d06ec19459d99e5809ddbf36145.json"}}, {"family": "Gerszten", "given": "Robert E", "initials": "RE", "orcid": "0000-0002-6767-7687", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/6ddb55dc5a54401d8d958fac1c46e8b8.json"}}, {"family": "M\u00e4larstig", "given": "Anders", "initials": "A", "orcid": "0000-0003-2608-1358", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/32b012456e6f490e99b12f5fb1216ce8.json"}}, {"family": "Danesh", "given": "John", "initials": "J"}, {"family": "Sim", "given": "Xueling", "initials": "X", "orcid": "0000-0002-1233-7642", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/b9aec75e482049f5b169a9cfc517a351.json"}}, {"family": "Langenberg", "given": "Claudia", "initials": "C", "orcid": "0000-0002-5017-7344", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/f287f3248cc24c6cbfc100c249b87418.json"}}, {"family": "Wilson", "given": "James F", "initials": "JF", "orcid": "0000-0001-5751-9178", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/513b6983cc9d478ab9d81c2f21579961.json"}}, {"family": "Butterworth", "given": "Adam S", "initials": "AS", "orcid": "0000-0002-6915-9015", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/88842023860148bb8d155b5c18db72a8.json"}}, {"family": "Inouye", "given": "Michael", "initials": "M", "orcid": "0000-0001-9413-6520", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/d1abe69d2ee548b9b754ebcd5eeabac7.json"}}], "type": "journal article", "published": "2023-04-00", "journal": {"title": "Nature", "issn": "1476-4687", "volume": "616", "issue": "7955", "pages": "123-131", "issn-l": "0028-0836"}, "abstract": "The use of omic modalities to dissect the molecular underpinnings of common diseases and traits is becoming increasingly common. But multi-omic traits can be genetically predicted, which enables highly cost-effective and powerful analyses for studies that do not have multi-omics1. Here we examine a large cohort (the INTERVAL study2; n = 50,000 participants) with extensive multi-omic data for plasma proteomics (SomaScan, n = 3,175; Olink, n = 4,822), plasma metabolomics (Metabolon HD4, n = 8,153), serum metabolomics (Nightingale, n = 37,359) and whole-blood Illumina RNA sequencing (n = 4,136), and use machine learning to train genetic scores for 17,227 molecular traits, including 10,521 that reach Bonferroni-adjusted significance. We evaluate the performance of genetic scores through external validation across cohorts of individuals of European, Asian and African American ancestries. In addition, we show the utility of these multi-omic genetic scores by quantifying the genetic control of biological pathways and by generating a synthetic multi-omic dataset of the UK Biobank3 to identify disease associations using a phenome-wide scan. We highlight a series of biological insights with regard to genetic mechanisms in metabolism and canonical pathway associations with disease; for example, JAK-STAT signalling and coronary atherosclerosis. Finally, we develop a portal ( https://www.omicspred.org/ ) to facilitate public access to all genetic scores and validation results, as well as to serve as a platform for future extensions and enhancements of multi-omic genetic scores.", "doi": "10.1038/s41586-023-05844-9", "pmid": "36991119", "labels": [], "xrefs": [{"db": "mid", "key": "NIHMS1905816"}, {"db": "pmc", "key": "PMC10323211"}, {"db": "pii", "key": "10.1038/s41586-023-05844-9"}], "notes": [], "created": "2026-08-20T08:58:33.726Z", "modified": "2026-08-20T08:58:34.418Z"}, {"entity": "publication", "iuid": "8697ea7072bf42ca8a9d25441c12f86c", "links": {"self": {"href": "https://publications-affiliated.scilifelab.se/publication/8697ea7072bf42ca8a9d25441c12f86c.json"}, "display": {"href": "https://publications-affiliated.scilifelab.se/publication/8697ea7072bf42ca8a9d25441c12f86c"}}, "title": "Mapping pQTLs of circulating inflammatory proteins identifies drivers of immune-related disease risk and novel therapeutic targets", "authors": [{"family": "Zhao", "given": "Jing Hua", "initials": "JH"}, {"family": "Stacey", "given": "David", "initials": "D"}, {"family": "Eriksson", "given": "Niclas", "initials": "N"}, {"family": "Macdonald-Dunlop", "given": "Erin", "initials": "E"}, {"family": "Hedman", "given": "\u00c5sa K", "initials": "\u00c5K"}, {"family": "Kalnapenkis", "given": "Anette", "initials": "A"}, {"family": "Enroth", "given": "Stefan", "initials": "S", "orcid": "0000-0002-5056-9137", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/ae9be8ef3b1145239a4e0231e2a148cd.json"}}, {"family": "Cozzetto", "given": "Domenico", "initials": "D"}, {"family": "Digby-Bell", "given": "Jonathan", "initials": "J"}, {"family": "Marten", "given": "Jonathan", "initials": "J"}, {"family": "Folkersen", "given": "Lasse", "initials": "L", "orcid": "0000-0003-0708-9530", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/de3038c0ebcd4cfa8e1bd2b657c84268.json"}}, {"family": "Herder", "given": "Christian", "initials": "C"}, {"family": "Jonsson", "given": "Lina", "initials": "L"}, {"family": "Bergen", "given": "Sarah E", "initials": "SE"}, {"family": "Geiger", "given": "Christian", "initials": "C"}, {"family": "Needham", "given": "Elise J", "initials": "EJ"}, {"family": "Surendran", "given": "Praveen", "initials": "P"}, {"family": "Paul", "given": "Dirk S", "initials": "DS", "orcid": "0000-0002-8230-0116", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/2169975c0a46456c9f29a2b7b3da0b30.json"}}, {"family": "Polasek", "given": "Ozren", "initials": "O"}, {"family": "Thorand", "given": "Barbara", "initials": "B"}, {"family": "Grallert", "given": "Harald", "initials": "H"}, {"family": "Roden", "given": "Michael", "initials": "M"}, {"family": "V\u00f5sa", "given": "Urmo", "initials": "U"}, {"family": "Esko", "given": "Tonu", "initials": "T"}, {"family": "Hayward", "given": "Caroline", "initials": "C"}, {"family": "Johansson", "given": "\u00c5sa", "initials": "\u00c5", "orcid": "0000-0002-2915-4498", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/a0bac3e1e64949fcbac4b4d839e1144d.json"}}, {"family": "Gyllensten", "given": "Ulf", "initials": "U"}, {"family": "Powell", "given": "Nicholas", "initials": "N"}, {"family": "Hansson", "given": "Oskar", "initials": "O"}, {"family": "Mattsson-Carlgren", "given": "Niklas", "initials": "N"}, {"family": "Joshi", "given": "Peter K", "initials": "PK", "orcid": "0000-0002-6361-5059", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/67a2c02915a5435d8ff7e148eeab9cc8.json"}}, {"family": "Danesh", "given": "John", "initials": "J"}, {"family": "Padyukov", "given": "Leonid", "initials": "L", "orcid": "0000-0003-2950-5670", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/336dfd4ed41542338e3aae1e29ce1da2.json"}}, {"family": "Klareskog", "given": "Lars", "initials": "L"}, {"family": "Land\u00e9n", "given": "Mikael", "initials": "M"}, {"family": "Wilson", "given": "James F", "initials": "JF"}, {"family": "Siegbahn", "given": "Agneta", "initials": "A"}, {"family": "Wallentin", "given": "Lars", "initials": "L"}, {"family": "M\u00e4larstig", "given": "Anders", "initials": "A"}, {"family": "Butterworth", "given": "Adam S", "initials": "AS", "orcid": "0000-0002-6915-9015", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/88842023860148bb8d155b5c18db72a8.json"}}, {"family": "Peters", "given": "James E", "initials": "JE", "orcid": "0000-0002-9415-3440", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/1cdf78018d1448498239609190aade2d.json"}}], "type": "posted-content", "published": "2023-03-27", "journal": {"issn-l": null}, "abstract": null, "doi": "10.1101/2023.03.24.23287680", "pmid": null, "labels": [], "xrefs": [], "notes": [], "created": "2026-08-20T10:44:48.901Z", "modified": "2026-08-20T10:44:48.996Z"}, {"entity": "publication", "iuid": "0be21bc9af054a9dbd660cc18c482e95", "links": {"self": {"href": "https://publications-affiliated.scilifelab.se/publication/0be21bc9af054a9dbd660cc18c482e95.json"}, "display": {"href": "https://publications-affiliated.scilifelab.se/publication/0be21bc9af054a9dbd660cc18c482e95"}}, "title": "An atlas of genetic scores to predict multi-omic traits", "authors": [{"family": "Xu", "given": "Yu", "initials": "Y"}, {"family": "Ritchie", "given": "Scott C", "initials": "SC", "orcid": "0000-0002-8454-9548", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/36a4d823852c4bae97ddc68a05030b72.json"}}, {"family": "Liang", "given": "Yujian", "initials": "Y"}, {"family": "Timmers", "given": "Paul R H J", "initials": "PRHJ", "orcid": "0000-0002-5197-1267", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/c1a7fb58cb2f4bd1b48f23be33de0c6e.json"}}, {"family": "Pietzner", "given": "Maik", "initials": "M"}, {"family": "Lannelongue", "given": "Lo\u00efc", "initials": "L", "orcid": "0000-0002-9135-1345", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/8d2fdb81bd8c4b93af2d061f6421540f.json"}}, {"family": "Lambert", "given": "Samuel A", "initials": "SA"}, {"family": "Tahir", "given": "Usman A", "initials": "UA"}, {"family": "May-Wilson", "given": "Sebastian", "initials": "S", "orcid": "0000-0003-2668-5717", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/3d39731ddad649e88c6958a9fc03008b.json"}}, {"family": "Johansson", "given": "\u00c5sa", "initials": "\u00c5", "orcid": "0000-0002-2915-4498", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/a0bac3e1e64949fcbac4b4d839e1144d.json"}}, {"family": "Surendran", "given": "Praveen", "initials": "P"}, {"family": "Nath", "given": "Artika P", "initials": "AP"}, {"family": "Persyn", "given": "Elodie", "initials": "E"}, {"family": "Peters", "given": "James E", "initials": "JE", "orcid": "0000-0002-9415-3440", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/1cdf78018d1448498239609190aade2d.json"}}, {"family": "Oliver-Williams", "given": "Clare", "initials": "C"}, {"family": "Deng", "given": "Shuliang", "initials": "S"}, {"family": "Prins", "given": "Bram", "initials": "B"}, {"family": "Foguet", "given": "Carles", "initials": "C"}, {"family": "Luan", "given": "Jian\u2019an", "initials": "J"}, {"family": "Bomba", "given": "Lorenzo", "initials": "L"}, {"family": "Soranzo", "given": "Nicole", "initials": "N"}, {"family": "Angelantonio", "given": "Emanuele Di", "initials": "ED", "orcid": "0000-0001-8776-6719", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/1d7d115e563b4050a28e496abd8af511.json"}}, {"family": "Pirastu", "given": "Nicola", "initials": "N"}, {"family": "Tai", "given": "E Shyong", "initials": "ES"}, {"family": "van Dam", "given": "Rob M", "initials": "RM"}, {"family": "Davenport", "given": "Emma E", "initials": "EE"}, {"family": "Paul", "given": "Dirk S", "initials": "DS", "orcid": "0000-0002-8230-0116", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/2169975c0a46456c9f29a2b7b3da0b30.json"}}, {"family": "Yau", "given": "Christopher", "initials": "C", "orcid": "0000-0001-7615-8523", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/bbc82d06ec19459d99e5809ddbf36145.json"}}, {"family": "Gerszten", "given": "Robert E", "initials": "RE"}, {"family": "M\u00e4larstig", "given": "Anders", "initials": "A"}, {"family": "Danesh", "given": "John", "initials": "J"}, {"family": "Sim", "given": "Xueling", "initials": "X"}, {"family": "Langenberg", "given": "Claudia", "initials": "C"}, {"family": "Wilson", "given": "James F", "initials": "JF"}, {"family": "Butterworth", "given": "Adam S", "initials": "AS", "orcid": "0000-0002-6915-9015", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/88842023860148bb8d155b5c18db72a8.json"}}, {"family": "Inouye", "given": "Michael", "initials": "M"}], "type": "posted-content", "published": "2022-04-17", "journal": {"issn-l": null}, "abstract": null, "doi": "10.1101/2022.04.17.488593", "pmid": null, "labels": [], "xrefs": [], "notes": [], "created": "2026-08-20T10:10:54.579Z", "modified": "2026-08-20T10:10:54.734Z"}]}