{"entity": "researcher", "timestamp": "2026-04-12T03:11:13.794Z", "family": "Sankaran", "given": "Vijay G", "initials": "VG", "orcid": "0000-0003-0044-443X", "affiliations": ["Broad Institute of MIT and Harvard, Cambridge, MA, USA.", "Harvard Medical School, Boston, MA, USA.", "Division of Hematology/Oncology, Boston Children's Hospital and Department of Pediatric Oncology, Dana-Farber Cancer Institute, Boston, MA, USA."], "links": {"self": {"href": "https://publications-affiliated.scilifelab.se/researcher/0a967a5a378f406299b3fefe244361c9.json"}, "display": {"href": "https://publications-affiliated.scilifelab.se/researcher/0a967a5a378f406299b3fefe244361c9"}}, "publications": [{"entity": "publication", "iuid": "a7ef7b5645ea42cea42f0f56879378a8", "links": {"self": {"href": "https://publications-affiliated.scilifelab.se/publication/a7ef7b5645ea42cea42f0f56879378a8.json"}, "display": {"href": "https://publications-affiliated.scilifelab.se/publication/a7ef7b5645ea42cea42f0f56879378a8"}}, "title": "Genome-wide association study on 13 167 individuals identifies regulators of blood CD34+cell levels.", "authors": [{"family": "Lopez de Lapuente Portilla", "given": "Aitzkoa", "initials": "A"}, {"family": "Ekdahl", "given": "Ludvig", "initials": "L", "orcid": "0000-0002-4257-7284", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/4a3d35910b344c849efbb73fe4a630a3.json"}}, {"family": "Cafaro", "given": "Caterina", "initials": "C"}, {"family": "Ali", "given": "Zain", "initials": "Z"}, {"family": "Miharada", "given": "Natsumi", "initials": "N"}, {"family": "Thorleifsson", "given": "Gudmar", "initials": "G"}, {"family": "\u017demaitis", "given": "Kristijonas", "initials": "K", "orcid": "0000-0002-4098-0184", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/623fb0a2c32247e4845e84f830dd18fe.json"}}, {"family": "Lamarca Arrizabalaga", "given": "Antton", "initials": "A"}, {"family": "Thodberg", "given": "Malte", "initials": "M", "orcid": "0000-0001-6244-3841", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/7f2c232400714922bdbd28e77ede971e.json"}}, {"family": "Pertesi", "given": "Maroulio", "initials": "M"}, {"family": "Dhapola", "given": "Parashar", "initials": "P", "orcid": "0000-0002-8070-7238", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/e18a6fdfca924c549d5b20c79111867c.json"}}, {"family": "Bao", "given": "Erik", "initials": "E"}, {"family": "Niroula", "given": "Abhishek", "initials": "A"}, {"family": "Bali", "given": "Divya", "initials": "D", "orcid": "0000-0003-3178-1586", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/bbcd91ef892d4eeca466eed9adf596f7.json"}}, {"family": "Norddahl", "given": "Gudmundur", "initials": "G"}, {"family": "Ugidos Damboriena", "given": "Nerea", "initials": "N", "orcid": "0000-0003-4938-3973", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/8deff5e6dcb64aa1b6f24292cde28d03.json"}}, {"family": "Sankaran", "given": "Vijay G", "initials": "VG", "orcid": "0000-0003-0044-443X", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/0a967a5a378f406299b3fefe244361c9.json"}}, {"family": "Karlsson", "given": "G\u00f6ran", "initials": "G"}, {"family": "Thorsteinsdottir", "given": "Unnur", "initials": "U"}, {"family": "Larsson", "given": "Jonas", "initials": "J"}, {"family": "Stefansson", "given": "Kari", "initials": "K"}, {"family": "Nilsson", "given": "Bj\u00f6rn", "initials": "B"}], "type": "journal article", "published": "2022-03-17", "journal": {"title": "Blood", "issn": "1528-0020", "volume": "139", "issue": "11", "pages": "1659-1669", "issn-l": "0006-4971"}, "abstract": "Stem cell transplantation is a cornerstone in the treatment of blood malignancies. The most common method to harvest stem cells for transplantation is by leukapheresis, requiring mobilization of CD34+ hematopoietic stem and progenitor cells (HSPCs) from the bone marrow into the blood. Identifying the genetic factors that control blood CD34+ cell levels could reveal new drug targets for HSPC mobilization. Here we report the first large-scale, genome-wide association study on blood CD34+ cell levels. Across 13 167 individuals, we identify 9 significant and 2 suggestive associations, accounted for by 8 loci (PPM1H, CXCR4, ENO1-RERE, ITGA9, ARHGAP45, CEBPA, TERT, and MYC). Notably, 4 of the identified associations map to CXCR4, showing that bona fide regulators of blood CD34+ cell levels can be identified through genetic variation. Further, the most significant association maps to PPM1H, encoding a serine/threonine phosphatase never previously implicated in HSPC biology. PPM1H is expressed in HSPCs, and the allele that confers higher blood CD34+ cell levels downregulates PPM1H. Through functional fine-mapping, we find that this downregulation is caused by the variant rs772557-A, which abrogates an MYB transcription factor-binding site in PPM1H intron 1 that is active in specific HSPC subpopulations, including hematopoietic stem cells, and interacts with the promoter by chromatin looping. Furthermore, PPM1H knockdown increases the proportion of CD34+ and CD34+90+ cells in cord blood assays. Our results provide the first large-scale analysis of the genetic architecture of blood CD34+ cell levels and warrant further investigation of PPM1H as a potential inhibition target for stem cell mobilization.", "doi": "10.1182/blood.2021013220", "pmid": "35007327", "labels": {"Abhishek Niroula": null, "DDLS Fellow": null}, "xrefs": [{"db": "pii", "key": "S0006-4971(22)00038-6"}], "notes": [], "created": "2023-11-20T11:36:11.310Z", "modified": "2023-11-20T11:36:11.572Z"}, {"entity": "publication", "iuid": "6c36fbd87814421c9d019b4d974c92fd", "links": {"self": {"href": "https://publications-affiliated.scilifelab.se/publication/6c36fbd87814421c9d019b4d974c92fd.json"}, "display": {"href": "https://publications-affiliated.scilifelab.se/publication/6c36fbd87814421c9d019b4d974c92fd"}}, "title": "Functional dissection of inherited non-coding variation influencing multiple myeloma risk.", "authors": [{"family": "Ajore", "given": "Ram", "initials": "R"}, {"family": "Niroula", "given": "Abhishek", "initials": "A", "orcid": "0000-0002-5904-0635", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/05df7afc7a494ba5af8a378e5ffa53f0.json"}}, {"family": "Pertesi", "given": "Maroulio", "initials": "M", "orcid": "0000-0002-4869-8925", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/1395ddcc49604bc1a05ea52f7b1ad79a.json"}}, {"family": "Cafaro", "given": "Caterina", "initials": "C"}, {"family": "Thodberg", "given": "Malte", "initials": "M", "orcid": "0000-0001-6244-3841", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/7f2c232400714922bdbd28e77ede971e.json"}}, {"family": "Went", "given": "Molly", "initials": "M"}, {"family": "Bao", "given": "Erik L", "initials": "EL", "orcid": "0000-0002-6074-6766", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/7b5eac9b5ee541258aea4146fcbb7d49.json"}}, {"family": "Duran-Lozano", "given": "Laura", "initials": "L"}, {"family": "Lopez de Lapuente Portilla", "given": "Aitzkoa", "initials": "A"}, {"family": "Olafsdottir", "given": "Thorunn", "initials": "T", "orcid": "0000-0001-5454-938X", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/417237ea231141ce83a9f314aacc4714.json"}}, {"family": "Ugidos-Damboriena", "given": "Nerea", "initials": "N"}, {"family": "Magnusson", "given": "Olafur", "initials": "O"}, {"family": "Samur", "given": "Mehmet", "initials": "M", "orcid": "0000-0002-9978-5682", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/0b458dd507e6487c86b67a7189842894.json"}}, {"family": "Lareau", "given": "Caleb A", "initials": "CA", "orcid": "0000-0003-4179-4807", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/6458fb4cee9e45808ce001ed492d5d1b.json"}}, {"family": "Halldorsson", "given": "Gisli H", "initials": "GH", "orcid": "0000-0001-7067-9862", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/28549aa56c4543178dd7626dbc9e4667.json"}}, {"family": "Thorleifsson", "given": "Gudmar", "initials": "G"}, {"family": "Norddahl", "given": "Gudmundur L", "initials": "GL"}, {"family": "Gunnarsdottir", "given": "Kristbjorg", "initials": "K"}, {"family": "F\u00f6rsti", "given": "Asta", "initials": "A", "orcid": "0000-0002-9857-4728", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/a2356cdc19c040348a7924e3dd4b8c32.json"}}, {"family": "Goldschmidt", "given": "Hartmut", "initials": "H", "orcid": "0000-0003-0961-0035", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/f634b54dfdbd48bb9f53f574e0cfd023.json"}}, {"family": "Hemminki", "given": "Kari", "initials": "K"}, {"family": "van Rhee", "given": "Frits", "initials": "F"}, {"family": "Kimber", "given": "Scott", "initials": "S"}, {"family": "Sperling", "given": "Adam S", "initials": "AS", "orcid": "0000-0002-9369-4413", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/b8fef41b72dd464f9f0e46ddcd0a2434.json"}}, {"family": "Kaiser", "given": "Martin", "initials": "M", "orcid": "0000-0002-3677-4804", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/61695044f08e4490a7feaf7db2aacc07.json"}}, {"family": "Anderson", "given": "Kenneth", "initials": "K", "orcid": "0000-0002-6418-0886", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/eaec398be2ff4e25b8522e1a921f3215.json"}}, {"family": "Jonsdottir", "given": "Ingileif", "initials": "I", "orcid": "0000-0001-8339-150X", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/4f4e82de44504a55b50b0378447318f8.json"}}, {"family": "Munshi", "given": "Nikhil", "initials": "N", "orcid": "0000-0002-7344-9795", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/885baa458ac84ec8b7b3acb26fef7ec4.json"}}, {"family": "Rafnar", "given": "Thorunn", "initials": "T", "orcid": "0000-0003-0491-7046", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/67a01e1ebd79473dbc0059d38f066e55.json"}}, {"family": "Waage", "given": "Anders", "initials": "A"}, {"family": "Weinhold", "given": "Niels", "initials": "N"}, {"family": "Thorsteinsdottir", "given": "Unnur", "initials": "U"}, {"family": "Sankaran", "given": "Vijay G", "initials": "VG", "orcid": "0000-0003-0044-443X", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/0a967a5a378f406299b3fefe244361c9.json"}}, {"family": "Stefansson", "given": "Kari", "initials": "K", "orcid": "0000-0003-1676-864X", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/9edf80871ac84e76a4d1316fc7079d7d.json"}}, {"family": "Houlston", "given": "Richard", "initials": "R", "orcid": "0000-0002-5268-0242", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/e7605f3f03f94e1b95c011318f5e5d4c.json"}}, {"family": "Nilsson", "given": "Bj\u00f6rn", "initials": "B", "orcid": "0000-0001-5542-0254", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/2e9df5bbe6f948b196a65176963748c8.json"}}], "type": "journal article", "published": "2022-01-10", "journal": {"title": "Nat Commun", "issn": "2041-1723", "volume": "13", "issue": "1", "pages": "151", "issn-l": "2041-1723"}, "abstract": "Thousands of non-coding variants have been associated with increased risk of human diseases, yet the causal variants and their mechanisms-of-action remain obscure. In an integrative study combining massively parallel reporter assays (MPRA), expression analyses (eQTL, meQTL, PCHiC) and chromatin accessibility analyses in primary cells (caQTL), we investigate 1,039 variants associated with multiple myeloma (MM). We demonstrate that MM susceptibility is mediated by gene-regulatory changes in plasma cells and B-cells, and identify putative causal variants at six risk loci (SMARCD3, WAC, ELL2, CDCA7L, CEP120, and PREX1). Notably, three of these variants co-localize with significant plasma cell caQTLs, signaling the presence of causal activity at these precise genomic positions in an endogenous chromosomal context in vivo. Our results provide a systematic functional dissection of risk loci for a hematologic malignancy.", "doi": "10.1038/s41467-021-27666-x", "pmid": "35013207", "labels": {"Abhishek Niroula": null, "DDLS Fellow": null}, "xrefs": [{"db": "pmc", "key": "PMC8748989"}, {"db": "pii", "key": "10.1038/s41467-021-27666-x"}], "notes": [], "created": "2023-11-20T11:36:12.941Z", "modified": "2023-11-20T11:36:13.588Z"}, {"entity": "publication", "iuid": "13022802a88f46d2ab340d4ad21ad8c8", "links": {"self": {"href": "https://publications-affiliated.scilifelab.se/publication/13022802a88f46d2ab340d4ad21ad8c8.json"}, "display": {"href": "https://publications-affiliated.scilifelab.se/publication/13022802a88f46d2ab340d4ad21ad8c8"}}, "title": "Author Correction: Inherited causes of clonal haematopoiesis in 97,691 whole genomes.", "authors": [{"family": "Bick", "given": "Alexander G", "initials": "AG"}, {"family": "Weinstock", "given": "Joshua S", "initials": "JS", "orcid": "0000-0001-7013-1899", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/2501ed5d8a4e43d488e7267e58ad68cd.json"}}, {"family": "Nandakumar", "given": "Satish K", "initials": "SK"}, {"family": "Fulco", "given": "Charles P", "initials": "CP", "orcid": "0000-0002-6592-1279", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/a88d6f1a1767499e94942a47930ba21e.json"}}, {"family": "Bao", "given": "Erik L", "initials": "EL", "orcid": "0000-0002-6074-6766", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/7b5eac9b5ee541258aea4146fcbb7d49.json"}}, {"family": "Zekavat", "given": "Seyedeh M", "initials": "SM"}, {"family": "Szeto", "given": "Mindy D", "initials": "MD", "orcid": "0000-0003-3642-3753", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/c00a24090c674f2899267e4c3188b5da.json"}}, {"family": "Liao", "given": "Xiaotian", "initials": "X", "orcid": "0000-0002-9715-270X", "researcher": {"href": "https://publications-affiliated.scilifelab.se/researcher/2ed6215e49504d74b252dc5b93d707b3.json"}}, {"family": "Leventhal", "given": "Matthew J", "initials": "MJ"}, {"family": "Nasser", "given": "Joseph", "initials": "J"}, {"family": "Chang", "given": "Kyle", "initials": "K"}, {"family": "Laurie", "given": "Cecelia", "initials": "C"}, {"family": "Burugula", "given": "Bala Bharathi", "initials": "BB"}, {"family": "Gibson", "given": "Christopher J", "initials": "CJ"}, {"family": "Niroula", "given": "Abhishek", "initials": "A"}, {"family": "Lin", "given": "Amy E", "initials": "AE"}, {"family": "Taub", "given": "Margaret A", "initials": "MA"}, {"family": "Aguet", "given": "Francois", "initials": "F"}, {"family": "Ardlie", "given": "Kristin", "initials": "K"}, {"family": "Mitchell", "given": "Braxton D", "initials": "BD"}, {"family": "Barnes", "given": "Kathleen C", "initials": "KC"}, {"family": "Moscati", "given": "Arden", "initials": "A"}, {"family": "Fornage", "given": "Myriam", "initials": "M"}, {"family": "Redline", "given": "Susan", "initials": "S"}, {"family": "Psaty", "given": "Bruce M", "initials": "BM"}, {"family": "Silverman", "given": "Edwin K", "initials": "EK"}, {"family": "Weiss", "given": "Scott T", "initials": "ST"}, {"family": "Palmer", "given": "Nicholette D", "initials": "ND"}, {"family": "Vasan", "given": "Ramachandran S", "initials": "RS"}, {"family": "Burchard", "given": "Esteban G", "initials": "EG"}, {"family": "Kardia", "given": "Sharon L R", "initials": "SLR"}, {"family": "He", "given": "Jiang", "initials": "J"}, {"family": "Kaplan", "given": "Robert C", "initials": "RC"}, {"family": "Smith", "given": "Nicholas L", "initials": "NL"}, {"family": "Arnett", "given": "Donna K", "initials": "DK"}, {"family": "Schwartz", "given": "David A", "initials": "DA"}, {"family": "Correa", "given": "Adolfo", "initials": "A"}, {"family": "de Andrade", "given": "Mariza", "initials": "M"}, {"family": "Guo", "given": "Xiuqing", "initials": "X"}, {"family": "Konkle", "given": "Barbara A", "initials": "BA"}, {"family": "Custer", "given": "Brian", "initials": "B"}, {"family": "Peralta", "given": "Juan M", "initials": "JM"}, {"family": "Gui", "given": "Hongsheng", "initials": "H"}, {"family": "Meyers", "given": "Deborah A", "initials": "DA"}, {"family": "McGarvey", "given": "Stephen T", "initials": "ST"}, {"family": "Chen", "given": "Ida Yii-Der", "initials": "IY"}, {"family": "Shoemaker", "given": "M Benjamin", "initials": "MB"}, {"family": "Peyser", "given": "Patricia A", "initials": "PA"}, {"family": "Broome", "given": "Jai G", "initials": "JG"}, {"family": "Gogarten", "given": "Stephanie M", "initials": "SM"}, {"family": "Wang", "given": "Fei Fei", "initials": "FF"}, {"family": "Wong", "given": "Quenna", "initials": "Q"}, {"family": "Montasser", "given": "May E", "initials": "ME"}, {"family": "Daya", "given": "Michelle", "initials": "M"}, {"family": "Kenny", "given": "Eimear E", "initials": "EE"}, {"family": "North", "given": "Kari E", "initials": "KE"}, {"family": "Launer", "given": "Lenore J", "initials": "LJ"}, {"family": "Cade", "given": "Brian E", "initials": "BE"}, {"family": "Bis", "given": "Joshua C", "initials": "JC"}, {"family": "Cho", "given": "Michael H", "initials": "MH"}, {"family": "Lasky-Su", "given": "Jessica", "initials": "J"}, {"family": "Bowden", "given": "Donald W", "initials": "DW"}, {"family": "Cupples", "given": "L Adrienne", "initials": "LA"}, {"family": "Mak", "given": "Angel C Y", "initials": "ACY"}, {"family": "Becker", "given": "Lewis C", "initials": "LC"}, {"family": "Smith", "given": "Jennifer A", "initials": "JA"}, {"family": "Kelly", "given": "Tanika N", "initials": "TN"}, {"family": "Aslibekyan", "given": "Stella", "initials": "S"}, {"family": "Heckbert", "given": "Susan R", "initials": "SR"}, {"family": "Tiwari", "given": "Hemant K", "initials": "HK"}, {"family": "Yang", "given": "Ivana V", "initials": "IV"}, {"family": "Heit", "given": "John A", "initials": "JA"}, {"family": "Lubitz", "given": "Steven A", "initials": "SA"}, {"family": "Johnsen", "given": "Jill M", "initials": "JM"}, {"family": "Curran", "given": "Joanne E", "initials": "JE"}, {"family": "Wenzel", "given": "Sally E", "initials": "SE"}, {"family": "Weeks", "given": "Daniel E", "initials": "DE"}, {"family": "Rao", "given": "Dabeeru C", "initials": "DC"}, {"family": "Darbar", "given": "Dawood", "initials": "D"}, {"family": "Moon", "given": "Jee-Young", "initials": "JY"}, {"family": "Tracy", "given": "Russell P", "initials": "RP"}, {"family": "Buth", "given": "Erin J", "initials": "EJ"}, {"family": "Rafaels", "given": "Nicholas", "initials": "N"}, {"family": "Loos", "given": "Ruth J F", "initials": "RJF"}, {"family": "Durda", "given": "Peter", "initials": "P"}, {"family": "Liu", "given": "Yongmei", "initials": "Y"}, {"family": "Hou", "given": "Lifang", "initials": "L"}, {"family": "Lee", "given": "Jiwon", "initials": "J"}, {"family": "Kachroo", "given": "Priyadarshini", "initials": "P"}, {"family": "Freedman", "given": "Barry I", "initials": "BI"}, {"family": "Levy", "given": "Daniel", "initials": "D"}, {"family": "Bielak", "given": "Lawrence F", "initials": "LF"}, {"family": "Hixson", "given": "James E", "initials": "JE"}, {"family": "Floyd", "given": "James S", "initials": "JS"}, {"family": "Whitsel", "given": "Eric A", "initials": "EA"}, {"family": "Ellinor", "given": "Patrick T", "initials": "PT"}, {"family": "Irvin", "given": "Marguerite R", "initials": "MR"}, {"family": "Fingerlin", "given": "Tasha E", "initials": "TE"}, {"family": "Raffield", "given": "Laura M", "initials": "LM"}, {"family": "Armasu", "given": "Sebastian M", "initials": "SM"}, {"family": "Wheeler", "given": "Marsha M", "initials": "MM"}, {"family": "Sabino", "given": "Ester C", "initials": "EC"}, {"family": "Blangero", "given": "John", "initials": "J"}, {"family": "Williams", "given": "L Keoki", "initials": "LK"}, {"family": "Levy", "given": "Bruce D", "initials": "BD"}, {"family": "Sheu", 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