{"entity": "publication", "iuid": "ddc21444b5d94ff1994500ba5ede617d", "timestamp": "2026-08-26T22:47:34.569Z", "links": {"self": {"href": "https://publications-affiliated.scilifelab.se/publication/ddc21444b5d94ff1994500ba5ede617d.json"}, "display": {"href": "https://publications-affiliated.scilifelab.se/publication/ddc21444b5d94ff1994500ba5ede617d"}}, "title": "TissUUmaps: interactive visualization of large-scale spatial gene expression and tissue morphology data.", "authors": [{"family": "Solorzano", "given": "Leslie", "initials": "L"}, {"family": "Partel", "given": "Gabriele", "initials": "G"}, {"family": "W\u00e4hlby", "given": "Carolina", "initials": "C"}], "type": "journal article", "published": "2020-08-01", "journal": {"title": "Bioinformatics", "issn": "1367-4811", "volume": "36", "issue": "15", "pages": "4363-4365", "issn-l": "1367-4803"}, "abstract": "Visual assessment of scanned tissue samples and associated molecular markers, such as gene expression, requires easy interactive inspection at multiple resolutions. This requires smart handling of image pyramids and efficient distribution of different types of data across several levels of detail.\n\nWe present TissUUmaps, enabling fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUmaps can be used both as a web service or locally in any computer, and regions of interest as well as local statistics can be extracted and shared among users.\n\nTissUUmaps is available on github at github.com/wahlby-lab/TissUUmaps. Several demos and video tutorials are available at http://tissuumaps.research.it.uu.se/howto.html.\n\nSupplementary data are available at Bioinformatics online.", "doi": "10.1093/bioinformatics/btaa541", "pmid": "32449759", "labels": [], "xrefs": [{"db": "pmc", "key": "PMC7520034"}, {"db": "pii", "key": "5843786"}], "notes": [], "created": "2026-08-20T09:39:14.365Z", "modified": "2026-08-20T09:39:14.416Z"}