Fellows programme

This label is applied to publications by SciLifeLab Fellows starting the year they took up their position at SciLifeLab.

Year 2021

Anticancer effects of novel NSAIDs derivatives on cultured human glioblastoma cells.
Özdemir Ö, Marinelli L, Cacciatore I, ..., Mardinoglu A, Turkez H
Z Naturforsch C J Biosci 76 (7-8) 329-335 [2021-07-27; online 2020-09-05]
Adil Mardinoglu Fellows programme
A genomic catalog of Earth’s microbiomes
Nayfach S, Roux S, Seshadri R, ..., Eloe-Fadrosh EA, None
Nat Biotechnol 39 (4) 499-509 [2021-04-00; online 2020-11-09]
Fellows programme Sarahi Garcia
Addressing the heterogeneity in liver diseases using biological networks.
Lam S, Doran S, Yuksel HH, ..., Uhlen M, Mardinoglu A
Brief. Bioinformatics 22 (2) 1751-1766 [2021-03-22; online 2020-03-24]
Adil Mardinoglu Fellows programme
Ulipristal Acetate for Treatment of Premenstrual Dysphoric Disorder: A Proof-of-Concept Randomized Controlled Trial
Comasco E, Kopp Kallner H, Bixo M, ..., Epperson CN, Sundström-Poromaa I
AJP 178 (3) 256-265 [2021-03-01; online 2021-03-01]
Erika Comasco Fellows programme
Systems biology based drug repositioning for development of cancer therapy.
Turanli B, Altay O, Borén J, ..., Arga KY, Mardinoglu A
Semin. Cancer Biol. 68 (-) 47-58 [2021-01-00; online 2019-09-27]
Adil Mardinoglu Fellows programme
Neuroimaging the menstrual cycle: A multimodal systematic review.
Dubol M, Epperson CN, Sacher J, ..., Sundström-Poromaa I, Comasco E
Front Neuroendocrinol 60 (-) 100878 [2021-01-00; online 2020-10-22]
Erika Comasco Fellows programme

Year 2020

Amino Acid Modified RNA Bases as Building Blocks of an Early Earth RNA-Peptide World.
Nainytė M, Müller F, Ganazzoli G, ..., Globisch D, Carell T
Chemistry 26 (65) 14856-14860 [2020-11-20; online 2020-10-14]
Daniel Globisch Fellows programme
Potential Anticancer Effect of Carvacrol Codrugs on Human Glioblastoma Cells.
Yazici A, Marinelli L, Cacciatore I, ..., Mardinoğlu A, Türkez H
Curr Drug Deliv 18 (3) 350-356 [2020-10-29; online 2020-10-29]
Adil Mardinoglu Fellows programme
Progesterone - Friend or foe?
Sundström-Poromaa I, Comasco E, Sumner R, Luders E
Front Neuroendocrinol 59 (-) 100856 [2020-10-00; online 2020-07-28]
Erika Comasco Fellows programme
Body composition after allogeneic haematopoietic cell transplantation/total body irradiation in children and young people: a restricted systematic review.
Lorenc A, Hamilton-Shield J, Perry R, Stevens M, CTYA HSCT Adipose and Muscle Late Effects Working Group
J Cancer Surviv 14 (5) 624-642 [2020-10-00; online 2020-07-18]
Adil Mardinoglu Fellows programme
Integration of molecular profiles in a longitudinal wellness profiling cohort.
Tebani A, Gummesson A, Zhong W, ..., Uhlen M, Fagerberg L
Nat Commun 11 (1) 4487 [2020-09-08; online 2020-09-08]
Adil Mardinoglu Fellows programme
Predatory colponemids are the sister group to all other alveolates.
Tikhonenkov DV, Strassert JFH, Janouškovec J, ..., Burki F, Keeling PJ
Mol. Phylogenet. Evol. 149 (-) 106839 [2020-08-00; online 2020-04-21]
Fabien Burki Fellows programme
Quo vadis microRNAs?
Fromm B, Keller A, Yang X, ..., Peterson KJ, Griffiths-Jones S
Trends in Genetics 36 (7) 461-463 [2020-07-00; online 2020-04-16]
Fellows programme Marc Friedländer
Abundance and diversity of resistomes differ between healthy human oral cavities and gut.
Carr VR, Witherden EA, Lee S, ..., Gomez-Cabrero D, Moyes DL
Nat Commun 11 (1) 693 [2020-02-04; online 2020-02-04]
Fellows programme Saeed Shoaie
The molecular basis for sugar import in malaria parasites.
Qureshi AA, Suades A, Matsuoka R, ..., Delemotte L, Drew D
Nature 578 (7794) 321-325 [2020-02-00; online 2020-01-29]
Fellows programme Lucie Delemotte
Boosting Natural Killer Cell-Mediated Targeting of Sarcoma Through DNAM-1 and NKG2D.
Sayitoglu EC, Georgoudaki AM, Chrobok M, ..., Sutlu T, Duru AD
Front Immunol 11 (-) 40 [2020-01-28; online 2020-01-28]
Adil Mardinoglu Fellows programme
MirGeneDB 2.0: the metazoan microRNA complement.
Fromm B, Domanska D, Høye E, ..., Friedländer MR, Peterson KJ
Nucleic Acids Res. 48 (D1) D1172 [2020-01-08; online 2019-10-24]
Fellows programme Marc Friedländer
The New Tree of Eukaryotes.
Burki F, Roger AJ, Brown MW, Simpson AGB
Trends in Ecology & Evolution 35 (1) 43-55 [2020-01-00; online 2019-10-09]
Fabien Burki Fellows programme

Year 2019

A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart.
Asp M, Giacomello S, Larsson L, ..., Sylvén C, Lundeberg J
Cell 179 (7) 1647-1660.e19 [2019-12-12; online 2019-12-14]
Fellows programme Magda Bienko
Sharing Data from Molecular Simulations.
Abraham M, Apostolov R, Barnoud J, ..., Woods C, Zhmurov A
J Chem Inf Model 59 (10) 4093-4099 [2019-10-28; online 2019-10-11]
Fellows programme Lucie Delemotte
Salmonella persisters promote the spread of antibiotic resistance plasmids in the gut.
Bakkeren E, Huisman JS, Fattinger SA, ..., Diard M, Hardt WD
Nature 573 (7773) 276-280 [2019-09-00; online 2019-09-04]
Fellows programme Mikael Sellin
Turning Up the Heat: Local Temperature Control During in vivo Imaging of Immune Cells.
Ahl D, Eriksson O, Sedin J, ..., Christoffersson G, Phillipson M
Front Immunol 10 (-) 2036 [2019-08-27; online 2019-08-27]
Fellows programme Gustaf Christoffersson
Progress towards the Tree of Eukaryotes.
Keeling PJ, Burki F
Curr. Biol. 29 (16) R808-R817 [2019-08-19; online 2019-08-21]
Fabien Burki Fellows programme
Tools for Bioimaging Pancreatic β Cells in Diabetes.
Kang NY, Soetedjo AAP, Amirruddin NS, ..., Eriksson O, Teo AKK
Trends in molecular medicine 25 (8) 708-722 [2019-08-00; online 2019-06-06]
Fellows programme Olof Eriksson
The Potential Use of Metabolic Cofactors in Treatment of NAFLD.
Mardinoglu A, Ural D, Zeybel M, ..., Uhlén M, Borén J
Nutrients 11 (7) 1578 [2019-07-12; online 2019-07-12]
Adil Mardinoglu Fellows programme
RMetD2: a tool for integration of relative transcriptomics data into Genome-scale metabolic models
Zhang C, Lee S, Bidkhori G, ..., Nielsen J, Mardinoglu A
- - (-) - [2019-06-06; online 2019-06-06]
Adil Mardinoglu Fellows programme
Mucispirillum schaedleri Antagonizes Salmonella Virulence to Protect Mice against Colitis.
Herp S, Brugiroux S, Garzetti D, ..., Berry D, Stecher B
Cell Host Microbe 25 (5) 681-694.e8 [2019-05-08; online 2019-04-18]
Fellows programme Mikael Sellin
System-wide Profiling of RNA-Binding Proteins Uncovers Key Regulators of Virus Infection.
Garcia-Moreno M, Noerenberg M, Ni S, ..., Mohammed S, Castello A
Mol. Cell 74 (1) 196-211.e11 [2019-04-04; online 2019-02-21]
Fellows programme Vicent Pelechano
Case Reports of Pre-clinical Replication Studies in Metabolism and Diabetes.
von Herrath M, Pagni PP, Grove K, ..., Karlsen AE, Petersen JS
Cell Metab. 29 (4) 795-802 [2019-04-02; online 2019-03-14]
Fellows programme Gustaf Christoffersson
Plant microRNAs in human sera are likely contaminants.
Fromm B, Kang W, Rovira C, ..., Friedländer MR, Tosar JP
J Nutr Biochem 65 (-) 139-140 [2019-03-00; online 2018-09-05]
Fellows programme Marc Friedländer
Structural Patching Fosters Divergence of Mitochondrial Ribosomes.
Petrov AS, Wood EC, Bernier CR, ..., Brown A, Amunts A
Mol. Biol. Evol. 36 (2) 207-219 [2019-02-01; online 2018-12-06]
Alexey Amunts Fellows programme
Bass D, Ward GM, Burki F
Curr. Biol. 29 (1) R7-R8 [2019-01-07; online 2019-01-09]
Fabien Burki Fellows programme
Phylogenomics supports the monophyly of the Cercozoa.
Irwin NAT, Tikhonenkov DV, Hehenberger E, ..., Burki F, Keeling PJ
Mol. Phylogenet. Evol. 130 (-) 416-423 [2019-01-00; online 2018-10-11]
Fabien Burki Fellows programme

Year 2018

miRTrace reveals the organismal origins of microRNA sequencing data.
Kang W, Eldfjell Y, Fromm B, ..., Biryukova I, Friedländer MR
Genome Biol. 19 (1) 213 [2018-12-04; online 2018-12-04]
Fellows programme Marc Friedländer
Control of hepatic gluconeogenesis by Argonaute2.
Yan X, Wang Z, Bishop CA, ..., Willnow TE, Poy MN
Mol Metab 18 (-) 15-24 [2018-12-00; online 2018-10-09]
Fellows programme Marc Friedländer
Forces drive basement membrane invasion in Caenorhabditis elegans.
Cáceres R, Bojanala N, Kelley LC, ..., Sherwood DR, Plastino J
Proc. Natl. Acad. Sci. U.S.A. 115 (45) 11537-11542 [2018-11-06; online 2018-10-22]
Fellows programme Ilaria Testa
microRNA-205-5p is a modulator of insulin sensitivity that inhibits FOXO function.
Langlet F, Tarbier M, Haeusler RA, ..., Friedländer MR, Accili D
Mol Metab 17 (-) 49-60 [2018-11-00; online 2018-08-11]
Fellows programme Marc Friedländer
Rapid Isolation of the Mitoribosome from HEK Cells.
Aibara S, Andréll J, Singh V, Amunts A
J Vis Exp - (140) - [2018-10-04; online 2018-10-04]
Alexey Amunts Fellows programme
High Cell Density Perfusion Culture has a Maintained Exoproteome and Metabolome.
Zamani L, Lundqvist M, Zhang Y, ..., Rockberg J, Chotteau V
Biotechnol J 13 (10) e1800036 [2018-10-00; online 2018-07-13]
Adil Mardinoglu Fellows programme
Placental lncRNA Expression Is Associated With Prenatal Phthalate Exposure.
Machtinger R, Zhong J, Mansur A, ..., Karlsson O, Baccarelli AA
Toxicol Sci 163 (1) 116-122 [2018-05-01; online 2018-02-01]
Fellows programme Oskar Karlsson
Modular assembly of the nucleolar pre-60S ribosomal subunit.
Sanghai ZA, Miller L, Molloy KR, ..., Chait BT, Klinge S
Nature 556 (7699) 126-129 [2018-04-05; online 2018-03-05]
Fellows programme Jonas Barandun
Integrative Personal Omics Profiles during Periods of Weight Gain and Loss.
Piening BD, Zhou W, Contrepois K, ..., Weinstock GM, Snyder MP
Cell Systems 6 (2) 157-170.e8 [2018-02-28; online 2018-01-17]
Adil Mardinoglu Affiliated researcher Fellows programme
In Vivo Visualization of β-Cells by Targeting of GPR44.
Eriksson O, Johnström P, Cselenyi Z, ..., Skrtic S, Korsgren O
Diabetes 67 (2) 182-192 [2018-02-00; online 2017-12-05]
Fellows programme Olof Eriksson

Year 2017

A New Lineage of Eukaryotes Illuminates Early Mitochondrial Genome Reduction.
Janouškovec J, Tikhonenkov DV, Burki F, ..., Mylnikov AP, Keeling PJ
Curr. Biol. 27 (23) 3717-3724.e5 [2017-12-04; online 2017-11-22]
Affiliated researcher Fabien Burki Fellows programme
Studying Kv Channels Function using Computational Methods.
Deyawe A, Kasimova MA, Delemotte L, Loussouarn G, Tarek M
Methods in molecular biology (Clifton, N.J.) 1684 (-) 321-341 [2017-10-24; online 2017-10-24]
Fellows programme Lucie Delemotte
Maternal and female fetal testosterone levels are associated with maternal age and gestational weight gain.
Kallak TK, Hellgren C, Skalkidou A, ..., Campbell RE, Sundström Poromaa I
Eur. J. Endocrinol. 177 (4) 379-388 [2017-10-00; online 2017-07-13]
Erika Comasco Fellows programme
The ribosome assembly gene network is controlled by the feedback regulation of transcription elongation.
Gómez-Herreros F, Margaritis T, Rodríguez-Galán O, ..., Holstege FCP, Chávez S
Nucleic Acids Res. 45 (16) 9302-9318 [2017-09-19; online 2017-06-24]
Affiliated researcher Fellows programme Vicent Pelechano
Elsässer et al. reply.
Elsässer SJ, Noh KM, Diaz N, Allis CD, Banaszynski LA
Nature 548 (7665) E7-E9 [2017-08-02; online 2017-08-05]
Fellows programme Simon Elsässer
Plasma Mannose Levels Are Associated with Incident Type 2 Diabetes and Cardiovascular Disease.
Mardinoglu A, Stančáková A, Lotta LA, ..., Langenberg C, Smith U
Cell Metab. 26 (2) 281-283 [2017-08-01; online 2017-08-03]
Adil Mardinoglu Fellows programme
Vimentin deficiency in macrophages induces CD36-mediated inflammation
Håversen L, Ståhlman M, Mattson Hultén L, ..., Levin M, Borén J
Atherosclerosis 263 (-) e87-e88 [2017-08-00; online 2017-08-00]
Adil Mardinoglu Fellows programme
High-avidity IgA protects the intestine by enchaining growing bacteria.
Moor K, Diard M, Sellin ME, ..., Hardt WD, Slack E
Nature 544 (7651) 498-502 [2017-04-27; online 2017-04-12]
Affiliated researcher Fellows programme Mikael Sellin
Genetic and Functional Study of L-Type Amino Acid Transporter 1 in Schizophrenia.
Comasco E, Vumma R, Toffoletto S, ..., Jönsson EG, Venizelos N
Neuropsychobiology 74 (2) 96-103 [2017-02-11; online 2017-02-11]
Erika Comasco Fellows programme
Sex differences in depression during pregnancy and the postpartum period.
Sundström Poromaa I, Comasco E, Georgakis MK, Skalkidou A
J Neurosci Res 95 (1-2) 719-730 [2017-01-02; online 2016-11-22]
Erika Comasco Fellows programme

Year 2016

An NK Cell Perforin Response Elicited via IL-18 Controls Mucosal Inflammation Kinetics during Salmonella Gut Infection.
Müller AA, Dolowschiak T, Sellin ME, ..., LeibundGut-Landmann S, Hardt WD
PLoS Pathog 12 (6) e1005723 [2016-06-00; online 2016-06-24]
Fellows programme Mikael Sellin
Rpb1 foot mutations demonstrate a major role of Rpb4 in mRNA stability during stress situations in yeast.
Garrido-Godino AI, García-López MC, García-Martínez J, ..., Pérez-Ortín JE, Navarro F
Biochim. Biophys. Acta 1859 (5) 731-743 [2016-05-00; online 2016-03-18]
Affiliated researcher Fellows programme Vicent Pelechano
Evolutionary Origins of Rhizarian Parasites.
Sierra R, Cañas-Duarte SJ, Burki F, ..., Arzul I, Pawlowski J
Mol. Biol. Evol. 33 (4) 980-983 [2016-04-00; online 2015-12-16]
Fabien Burki Fellows programme
Glycation Reactivity of a Quorum-Sensing Signaling Molecule.
Tsuchikama K, Gooyit M, Harris TL, ..., Kaufmann GF, Janda KD
Angew. Chem. Int. Ed. Engl. 55 (12) 4002-4006 [2016-03-14; online 2016-02-17]
Daniel Globisch Fellows programme
Stepwise nucleosome translocation by RSC remodeling complexes.
Harada BT, Hwang WL, Deindl S, ..., Bartholomew B, Zhuang X
Elife 5 (-) - [2016-02-19; online 2016-02-19]
Fellows programme Sebastian Deindl

Year 2015

Litomosoides sigmodontis: a jird urine metabolome study.
Globisch D, Specht S, Pfarr KM, ..., Hoerauf A, Janda KD
Bioorg. Med. Chem. Lett. 25 (24) 5804-5807 [2015-12-15; online 2015-10-23]
Daniel Globisch Fellows programme
Stratification of Hepatocellular Carcinoma Patients Based on Acetate Utilization.
Björnson E, Mukhopadhyay B, Asplund A, ..., Nielsen J, Mardinoglu A
Cell Reports 13 (9) 2014-2026 [2015-12-01; online 2015-11-19]
Adil Mardinoglu Affiliated researcher Fellows programme
The 2015 super-resolution microscopy roadmap
Hell SW, Sahl SJ, Bates M, ..., Diaspro A, Cordes T
J. Phys. D: Appl. Phys. 48 (44) 443001 [2015-11-11; online 2015-10-15]
Fellows programme Ilaria Testa
The gut microbiota modulates host amino acid and glutathione metabolism in mice.
Mardinoglu A, Shoaie S, Bergentall M, ..., Bäckhed F, Nielsen J
Mol Syst Biol 11 (10) 834 [2015-10-16; online 2015-10-16]
Adil Mardinoglu Fellows programme
Genome-wide maps of nuclear lamina interactions in single human cells.
Kind J, Pagie L, de Vries SS, ..., van Oudenaarden A, van Steensel B
Cell 163 (1) 134-147 [2015-09-24; online 2015-09-10]
Affiliated researcher Fellows programme Magda Bienko
miR-184 Regulates Pancreatic β-Cell Function According to Glucose Metabolism.
Tattikota SG, Rathjen T, Hausser J, ..., Friedländer MR, Poy MN
J Biol Chem 290 (33) 20284-20294 [2015-08-14; online 2015-07-07]
Affiliated researcher Fellows programme Marc Friedländer
Quantifying Diet-Induced Metabolic Changes of the Human Gut Microbiome.
Shoaie S, Ghaffari P, Kovatcheva-Datchary P, ..., Bäckhed F, Nielsen J
Cell Metab. 22 (2) 320-331 [2015-08-04; online 2015-08-06]
Adil Mardinoglu Fellows programme
Critical Role of Histone Turnover in Neuronal Transcription and Plasticity.
Maze I, Wenderski W, Noh KM, ..., Molina H, Allis CD
Neuron 87 (1) 77-94 [2015-07-01; online 2015-07-04]
Fellows programme Simon Elsässer
Non-reciprocal Interspecies Hybridization Barriers in the Capsella Genus Are Established in the Endosperm.
Rebernig CA, Lafon-Placette C, Hatorangan MR, Slotte T, Köhler C
PLoS Genet 11 (6) e1005295 [2015-06-00; online 2015-06-18]
Fellows programme Tanja Slotte
Integrated genome and transcriptome sequencing of the same cell.
Dey SS, Kester L, Spanjaard B, Bienko M, van Oudenaarden A
Nat. Biotechnol. 33 (3) 285-289 [2015-03-00; online 2015-01-19]
Fellows programme Magda Bienko
Flagellin as carrier and adjuvant in cocaine vaccine development.
Lockner JW, Eubanks LM, Choi JL, ..., Wilson IA, Janda KD
Mol. Pharm. 12 (2) 653-662 [2015-02-02; online 2015-01-07]
Daniel Globisch Fellows programme
Proteomics. Tissue-based map of the human proteome.
Uhlén M, Fagerberg L, Hallström BM, ..., Nielsen J, Pontén F
Science (New York, N.Y.) 347 (6220) 1260419 [2015-01-23; online 2015-01-24]
Adil Mardinoglu Affiliated researcher Fellows programme
Dual channel RESOLFT nanoscopy by using fluorescent state kinetics.
Testa I, D'Este E, Urban NT, Balzarotti F, Hell SW
Nano Lett. 15 (1) 103-106 [2015-01-14; online 2014-12-02]
Fellows programme Ilaria Testa

Year 2014

Evidence for the biogenesis of more than 1,000 novel human microRNAs.
Friedländer MR, Lizano E, Houben AJ, ..., Martí E, Estivill X
Genome Biol. 15 (4) R57 [2014-04-07; online 2014-04-07]
Fellows programme Marc Friedländer