{"entity": "journal", "iuid": "39d929a03a804494821cc7397b5b1877", "timestamp": "2026-08-20T20:28:21.830Z", "links": {"self": {"href": "https://publications-affiliated.scilifelab.se/journal/EuPA%20Open%20Proteom.json"}, "display": {"href": "https://publications-affiliated.scilifelab.se/journal/EuPA%20Open%20Proteom"}}, "title": "EuPA Open Proteom", "issn": "2212-9685", "issn-l": null, "publications_count": 3, "publications": [{"entity": "publication", "iuid": "aab4d4ab21ed4f5588e9a1f132de4605", "links": {"self": {"href": "https://publications-affiliated.scilifelab.se/publication/aab4d4ab21ed4f5588e9a1f132de4605.json"}, "display": {"href": "https://publications-affiliated.scilifelab.se/publication/aab4d4ab21ed4f5588e9a1f132de4605"}}, "title": "Proceedings of the EuBIC-MS 2020 Developers\u2019 Meeting", "authors": [{"family": "Ashwood", "given": "Christopher", "initials": "C"}, {"family": "Bittremieux", "given": "Wout", "initials": "W"}, {"family": "Deutsch", "given": "Eric W", "initials": "EW"}, {"family": "Doncheva", "given": "Nadezhda T", "initials": "NT"}, {"family": "Dorfer", "given": "Viktoria", "initials": "V"}, {"family": "Gabriels", "given": "Ralf", "initials": "R"}, {"family": "Gorshkov", "given": "Vladimir", "initials": "V"}, {"family": "Gupta", "given": "Surya", "initials": "S"}, {"family": "Jones", "given": "Andrew R", "initials": "AR"}, {"family": "K\u00e4ll", "given": "Lukas", "initials": "L"}, {"family": "Kopczynski", "given": "Dominik", "initials": "D"}, {"family": "Lane", "given": "Lydie", "initials": "L"}, {"family": "Lautenbacher", "given": "Ludwig", "initials": "L"}, {"family": "Legeay", "given": "Marc", "initials": "M"}, {"family": "Locard-Paulet", "given": "Marie", "initials": "M"}, {"family": "Mesuere", "given": "Bart", "initials": "B"}, {"family": "Perez-Riverol", "given": "Yasset", "initials": "Y"}, {"family": "Netz", "given": "Eugen", "initials": "E"}, {"family": "Pfeuffer", "given": "Julianus", "initials": "J"}, {"family": "Sachsenberg", "given": "Timo", "initials": "T"}, {"family": "Salz", "given": "Renee", "initials": "R"}, {"family": "Samaras", "given": "Patroklos", "initials": "P"}, {"family": "Schiebenhoefer", "given": "Henning", "initials": "H"}, {"family": "Schmidt", "given": "Tobias", "initials": "T"}, {"family": "Schw\u00e4mmle", "given": "Veit", "initials": "V"}, {"family": "Soggiu", "given": "Alessio", "initials": "A"}, {"family": "Uszkoreit", "given": "Julian", "initials": "J"}, {"family": "Van Den Bossche", "given": "Tim", "initials": "T"}, {"family": "Van Puyvelde", "given": "Bart", "initials": "B"}, {"family": "Van Strien", "given": "Joeri", "initials": "J"}, {"family": "Verschaffelt", "given": "Pieter", "initials": "P"}, {"family": "Webel", "given": "Henry", "initials": "H"}, {"family": "Willems", "given": "Sander", "initials": "S"}], "type": "journal-article", "published": "2020-12-00", "journal": {"title": "EuPA Open Proteom", "issn": "2212-9685", "volume": "24", "pages": "1-6", "issn-l": null}, "abstract": null, "doi": "10.1016/j.euprot.2020.11.001", "pmid": null, "labels": [], "xrefs": [], "notes": [], "created": "2026-08-20T07:55:52.232Z", "modified": "2026-08-20T07:55:52.245Z"}, {"entity": "publication", "iuid": "ec961e8ca54042d585bc8b765d2410f1", "links": {"self": {"href": "https://publications-affiliated.scilifelab.se/publication/ec961e8ca54042d585bc8b765d2410f1.json"}, "display": {"href": "https://publications-affiliated.scilifelab.se/publication/ec961e8ca54042d585bc8b765d2410f1"}}, "title": "Introducing the Affinity Binder Knockdown Initiative\u2fffA public\u2fffprivate partnership for validation of affinity reagents.", "authors": [{"family": "Alm", "given": "Tove", "initials": "T"}, {"family": "Lundberg", "given": "Emma", "initials": "E"}, {"family": "Uhl\u00e9n", "given": "Mathias", "initials": "M"}], "type": "journal article", "published": "2016-03-00", "journal": {"title": "EuPA Open Proteom", "issn": "2212-9685", "volume": "10", "pages": "56-58", "issn-l": null}, "abstract": "The newly launched Affinity Binder Knockdown Initiative encourages antibody suppliers and users to join this public\u2fffprivate partnership, which uses crowdsourcing to collect characterization data on antibodies. Researchers are asked to share validation data from experiments where gene-editing techniques (such as siRNA or CRISPR) have been used to verify antibody binding. The initiative is launched under the aegis of Antibodypedia, a database designed to allow comparisons and scoring of publicly available antibodies towards human protein targets. What is known about an antibody is the foundation of the scoring and ranking system in Antibodypedia.", "doi": "10.1016/j.euprot.2016.01.002", "pmid": "29900101", "labels": [], "xrefs": [{"db": "pmc", "key": "PMC5988587"}, {"db": "pii", "key": "S2212-9685(16)30002-2"}], "notes": [], "created": "2026-08-20T07:55:44.466Z", "modified": "2026-08-20T07:55:44.534Z"}, {"entity": "publication", "iuid": "f04969dd4cab4c6f94733628c8e67c4d", "links": {"self": {"href": "https://publications-affiliated.scilifelab.se/publication/f04969dd4cab4c6f94733628c8e67c4d.json"}, "display": {"href": "https://publications-affiliated.scilifelab.se/publication/f04969dd4cab4c6f94733628c8e67c4d"}}, "title": "Towards a functional definition of the mitochondrial human proteome.", "authors": [{"family": "Fasano", "given": "Mauro", "initials": "M"}, {"family": "Alberio", "given": "Tiziana", "initials": "T"}, {"family": "Babu", "given": "Mohan", "initials": "M"}, {"family": "Lundberg", "given": "Emma", "initials": "E"}, {"family": "Urbani", "given": "Andrea", "initials": "A"}], "type": "journal article", "published": "2016-03-00", "journal": {"title": "EuPA Open Proteom", "issn": "2212-9685", "volume": "10", "pages": "24-27", "issn-l": null}, "abstract": "The mitochondrial human proteome project (mt-HPP) was initiated by the Italian HPP group as a part of both the chromosome-centric initiative (C-HPP) and the \u2fffbiology and disease driven\u2fff initiative (B/D-HPP). In recent years several reports highlighted how mitochondrial biology and disease are regulated by specific interactions with non-mitochondrial proteins. Thus, it is of great relevance to extend our present view of the mitochondrial proteome not only to those proteins that are encoded by or transported to mitochondria, but also to their interactors that take part in mitochondria functionality. Here, we propose a graphical representation of the functional mitochondrial proteome by retrieving mitochondrial proteins from the NeXtProt database and adding to the network their interactors as annotated in the IntAct database. Notably, the network may represent a reference to map all the proteins that are currently being identified in mitochondrial proteomics studies.", "doi": "10.1016/j.euprot.2016.01.004", "pmid": "29900096", "labels": [], "xrefs": [{"db": "pmc", "key": "PMC5988588"}, {"db": "pii", "key": "S2212-9685(16)30004-6"}], "notes": [], "created": "2026-08-20T07:55:46.128Z", "modified": "2026-08-20T07:55:46.175Z"}], "created": "2026-08-20T07:55:44.497Z", "modified": "2026-08-20T07:55:44.497Z"}