{"entity": "journal", "iuid": "8550c60f104f4344bc20798cc1cdd834", "timestamp": "2026-09-26T23:02:18.035Z", "links": {"self": {"href": "https://publications-affiliated.scilifelab.se/journal/Data%20Brief.json"}, "display": {"href": "https://publications-affiliated.scilifelab.se/journal/Data%20Brief"}}, "title": "Data Brief", "issn": "2352-3409", "issn-l": null, "publications_count": 2, "publications": [{"entity": "publication", "iuid": "0e46c63d6da8401f85e0398a24da09ac", "links": {"self": {"href": "https://publications-affiliated.scilifelab.se/publication/0e46c63d6da8401f85e0398a24da09ac.json"}, "display": {"href": "https://publications-affiliated.scilifelab.se/publication/0e46c63d6da8401f85e0398a24da09ac"}}, "title": "Data on the expression of cellular lncRNAs in human adenovirus infected cells.", "authors": [{"family": "Chen", "given": "Maoshan", "initials": "M"}, {"family": "Zhao", "given": "Hongxing", "initials": "H"}, {"family": "Lind", "given": "Sara Bergstr\u00f6m", "initials": "SB"}, {"family": "Pettersson", "given": "Ulf", "initials": "U"}], "type": "journal article", "published": "2016-09-00", "journal": {"title": "Data Brief", "issn": "2352-3409", "volume": "8", "pages": "1263-1279", "issn-l": null}, "abstract": "Expression of cellular long non-coding RNAs (lncRNAs) in human primary lung fibroblasts (IMR-90) during the course of adenovirus type 2 (Ad2) infection was studied by strand-specific whole transcriptome sequencing. In total, 645 cellular lncRNAs were expressed at a significant level and 398 of them were changed more than 2-fold. The changes in expression followed a distinct temporal pattern. Significantly, 80% of the changes occurred at the late phase and 80% of the de-regulated lncRNAs were up-regulated. The three largest groups of deregulated lncRNAs were 125 antisense RNAs, 111 pseudogenes and 85 long intergenic non-coding RNAs (lincRNAs). Lastly, more than 36% of lncRNAs have been shown to interact with RNA binding proteins.", "doi": "10.1016/j.dib.2016.06.053", "pmid": "27547808", "labels": [], "xrefs": [{"db": "pmc", "key": "PMC4983107"}, {"db": "pii", "key": "S2352-3409(16)30421-8"}], "notes": [], "created": "2026-09-23T14:09:20.264Z", "modified": "2026-09-23T14:09:20.302Z"}, {"entity": "publication", "iuid": "523f3574f2e544eead9e51717fc1a231", "links": {"self": {"href": "https://publications-affiliated.scilifelab.se/publication/523f3574f2e544eead9e51717fc1a231.json"}, "display": {"href": "https://publications-affiliated.scilifelab.se/publication/523f3574f2e544eead9e51717fc1a231"}}, "title": "Mass spectrometry data from a quantitative analysis of protein expression in gills of immuno-challenged blue mussels (Mytilus edulis).", "authors": [{"family": "H\u00f6rnaeus", "given": "K", "initials": "K"}, {"family": "Guillemant", "given": "J", "initials": "J"}, {"family": "Mi", "given": "J", "initials": "J"}, {"family": "Hernroth", "given": "B", "initials": "B"}, {"family": "Bergquist", "given": "J", "initials": "J"}, {"family": "Lind", "given": "S Bergstr\u00f6m", "initials": "SB"}], "type": "journal article", "published": "2016-09-00", "journal": {"title": "Data Brief", "issn": "2352-3409", "volume": "8", "pages": "470-473", "issn-l": null}, "abstract": "Here, we provide the dataset associated with our research article on the potential effects of ocean acidification on antimicrobial peptide (AMP) activity in the gills of Mytilus edulis, \"Impact of ocean acidification on antimicrobial activity in gills of the blue mussel (Mytilus edulis)\" [1]. Blue mussels were stimulated with lipopolysaccharides and samples were collected at different time points post injection. Protein extracts were prepared from the gills, digested using trypsin and a full in-depth proteome investigation was performed using liquid chromatography coupled to tandem mass spectrometry (LC-MS/MS). Protein identification and quantification was performed using the MaxQuant 1.5.1.2 software, \"MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification\" [2].", "doi": "10.1016/j.dib.2016.05.073", "pmid": "27358907", "labels": [], "xrefs": [{"db": "pmc", "key": "PMC4915946"}, {"db": "pii", "key": "S2352-3409(16)30361-4"}], "notes": [], "created": "2026-09-23T14:09:17.822Z", "modified": "2026-09-23T14:09:17.883Z"}], "created": "2026-09-23T14:09:17.829Z", "modified": "2026-09-23T14:09:17.829Z"}